PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G482700.1.p | ||||||||
Common Name | PRUPE_ppa002480mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 669aa MW: 77965 Da PI: 6.7813 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.8 | 3.8e-23 | 57 | 141 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++++ ++++w++ ++eleHnH+++ Prupe.1G482700.1.p 57 DFYNIYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIRLVDSKRWRIVEVELEHNHQVS 141 6*********************999*****************99888.....9**********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-21 | 57 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.3E-27 | 264 | 357 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.396 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.6E-4 | 558 | 583 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.6E-6 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MEEVCLNSEP VFEEGDDYEL EGDFTEHDNV TGETQRRKDP TAPTVGLEFD SFDEAYDFYN 60 IYGKEQGFGI RVSNSWFRSK RKERYRAKLS CSSAGFKKKS EANNPRPETR TGCPAMVVIR 120 LVDSKRWRIV EVELEHNHQV SPQIKRFYKS HKKMILAAKS AQPLPEPVTE IHTIKLYRTP 180 VMDVGSNGYS NFTESEGLNS IDLSKHLELK EGDAHAVYNY FCRMKLMNPN FYYLMDLDDD 240 GHLRNVFWAD ARSRAAYGYF CDTVAIDTTC LSNKYEIPLI SFVGVNHHGQ SVLLGCGFLG 300 HESVENFVWM LRAWLKCMLG QPPQVLITDQ CKPLQIAVSE VIPNARHCYC LWYIMQKVPE 360 KLGGLKGYEA IKRQLHKSVY NSLKIAEFET SWAEMVKCHE LGENRWLQIL YEDRQMWVPV 420 YLKDTFFSGM IPIQENESLT AFFDGYVHKH TSFKEFVDKY DLALHRKRMK EVVADLESRS 480 SSFELKTKCN FEVQLCKVYT REIFKRFQLE VEGMYSCFNT RQVSVNGPII TYIVKERVEV 540 EGKEKEVRCY EVLYETTQVD IRCICSLFNY KGYLCRHALN VLNYNGVEEV PSRYILPRWR 600 KDFKCRYLLH HGSSNIDVYN PVYWHNHLYK LALPVAEEGA QSEEHYKTTL QALEELLNKF 660 HLVEDTLV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5419 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G482700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007225141.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | M5Y3I6 | 0.0 | M5Y3I6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26340 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G482700.1.p |
Entrez Gene | 18790367 |
Publications ? help Back to Top | |||
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