PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G424100.1.p | ||||||||
Common Name | PRUPE_ppa015160mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 38171.2 Da PI: 5.5916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.3e-10 | 270 | 310 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Prupe.1G424100.1.p 270 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 310 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-14 | 259 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.926 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 265 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-11 | 266 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-11 | 269 | 314 | No hit | No description |
Pfam | PF00010 | 1.3E-7 | 270 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MNFEIPASFC PNIPEAEMGL SRVNESFFQH PSDALNSNVH YLSQESCYGN NNHGSAGIFT 60 AILNQENYYF GNSCHVPVAN DISASMDVYM NHHDHDGKSF GSFIPTFSDI VMEGSVSNKE 120 DSGSDRLGFS DDSQPAAIAI PGEELHLKRV HDVAEDKSNN DKSDSNPKKK PRLSKDLHII 180 MQVQKTKKNN ARSKKGEQAN SDVKVKDEEE SNTGADRQST SSCSSEDDNG SQETNGGETS 240 DPKTSSALNL NGKTRANRGS ATDPQSLYAR KRRERINERL RILQNLVPNG TKVDISTMLE 300 EAVHYVKFLQ LQIKLLSSDD MWMYAPIAYN GMDIGLSLQK MSPLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G424100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007224032.1 | 0.0 | transcription factor bHLH77 | ||||
TrEMBL | A0A251RBP5 | 0.0 | A0A251RBP5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ25231 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 4e-50 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G424100.1.p |
Entrez Gene | 18792670 |