PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G417400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 394aa    MW: 44028.4 Da    PI: 7.0184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G417400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  Prupe.1G417400.1.p 14 RGPWSPEEDTKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding37.36.4e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Prupe.1G417400.1.p  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.985962IPR017930Myb domain
SuperFamilySSF466892.05E-2611109IPR009057Homeodomain-like
SMARTSM007178.4E-131364IPR001005SANT/Myb domain
PfamPF002494.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-241569IPR009057Homeodomain-like
CDDcd001676.61E-101662No hitNo description
PROSITE profilePS5129421.50763117IPR017930Myb domain
SMARTSM007171.1E-1067115IPR001005SANT/Myb domain
PfamPF002491.5E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2370117IPR009057Homeodomain-like
CDDcd001673.50E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDTKLKSYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQLARR SSSGLIKQDI RRSSGSGGGG SNSHPMVPAA DDQSPYWPEL PVLAVPTVLP  180
YSPSIQQHQH QQQHQPCFND HASIRKLLIK LGGRFNSDVH HQDDTNVQPI QDGPTINLQF  240
PPALDSAQQV YEQQSSAPVA FIRNSNDIMV SSHHHQFEQT PYMVNNNTDD IIGDGMHMFQ  300
GQNGNYVTDQ LKEMVYNNMN PQRLDALEFL YGEDMMMVMN GESIGWGEMQ LICPPTHVAS  360
SSVDADGGSY ERLVPQELCG FNNGLSSYPA GVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G417400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224538.20.0transcription factor RAX2
TrEMBLA0A251RBE00.0A0A251RBE0_PRUPE; Uncharacterized protein
STRINGXP_008220419.10.0(Prunus mume)
STRINGEMJ257370.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.13e-76myb domain protein 84