PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G416800.1.p | ||||||||
Common Name | PRUPE_ppa008984mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 312aa MW: 35034 Da PI: 6.548 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.4e-19 | 152 | 206 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++ +++ +++++LA+kl+L rqV vWFqNrRa+ k Prupe.1G416800.1.p 152 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTK 206 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.7 | 3.6e-39 | 152 | 239 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ Prupe.1G416800.1.p 152 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCETLKEENRRLHKELQELK 239 69*************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.27E-18 | 142 | 209 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 148 | 208 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-16 | 150 | 212 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.20E-16 | 151 | 209 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 152 | 206 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 152 | 206 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 183 | 206 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.8E-8 | 208 | 242 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 9.3E-17 | 208 | 251 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSFDEACNTG LGLSLGCRDS PDHDHTNLQA PPDHHHHHHQ NTYKNKQIQL KYDHLLPSLT 60 LGPSAASKIE EAESTDLHQA VAAQEQDSSP CSGAFSSFSN SSSFKRDREL GGEEIEVEVE 120 VEVEVEEERV VNITSSRASE ELYEQDHEGS PRKKLRLSKE QSATLEDSFR EHTTLNPKQK 180 QDLARKLNLR PRQVEVWFQN RRARTKLKQT EADCELLKKC CETLKEENRR LHKELQELKL 240 MKQTATAAAA VPPFYMQFPT ATLTMCPSCE KICNGGDHHN HHGSSTSSFL IGSKPAHLIF 300 NPFSTHPSTA C* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 208 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1643 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G416800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007222987.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | M5XFE8 | 0.0 | M5XFE8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ24186 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 5e-67 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G416800.1.p |
Entrez Gene | 18789505 |