PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G405400.1.p
Common NamePRUPE_ppa022205mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 296aa    MW: 32394.2 Da    PI: 7.9734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G405400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+ Ed++l  ++k +G g W++ +++ g++R++k+c++rw++yl
  Prupe.1G405400.1.p 14 RGAWTALEDKILTSYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding49.78.3e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + +E+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  Prupe.1G405400.1.p  67 RGNISGDEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                         6777889***************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.659961IPR017930Myb domain
SuperFamilySSF466893.36E-2711108IPR009057Homeodomain-like
SMARTSM007172.7E-121363IPR001005SANT/Myb domain
PfamPF002498.6E-141461IPR001005SANT/Myb domain
CDDcd001673.22E-91661No hitNo description
PROSITE profilePS5129424.13662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2365115IPR009057Homeodomain-like
SMARTSM007178.5E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1367111IPR001005SANT/Myb domain
CDDcd001672.74E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRSPCCSKQ GLNRGAWTAL EDKILTSYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SGDEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAKGEP  120
TSTGSSKETS PPPTKSRAKR REIESKTTKP SAAAAAATLP PVIRTKATRL TKVLVPTIPQ  180
IPSDDYNQTA NASSSTNPSE LQGHQTQLTD QQVNAGDCTN NLNNNYGCND EDDDIEAKGG  240
FCNAFQSLPL DEAMINATWT GGNDCDLEDY GATLDLDSLA FLLDSEEWPS QDNIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G405400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9892811e-119JQ989281.1 Fragaria x ananassa transcription factor MYB9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224456.10.0transcription factor MYB6
TrEMBLM5Y1T60.0M5Y1T6_PRUPE; Uncharacterized protein
STRINGEMJ256550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-61myb domain protein 7