PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G405200.1.p

Common Name

Peace, PRUPE_ppa023768mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 284aa MW: 32271.2 Da PI: 8.8311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G405200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l d+++ +G g W++I+++ g++R++k+c++rw++yl Prupe.1G405200.1.p 14 RGAWTALEDQTLTDYIRTHGEGKWRKIPKEAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.2	3.2e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Prupe.1G405200.1.p 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTT 111 7999****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.4	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	7.71E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.727	62	116	IPR017930	Myb domain
SMART	SM00717	4.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-25	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGRTPCCSKV GLNRGAWTAL EDQTLTDYIR THGEGKWRKI PKEAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT TLGKKVNCTD 120 QQTKQSSGAV NDNTKKKRNK STKLPTSTDK TQPSTNIAVR TKALRFNKVL VTPHAQQEAI 180 FPHHADGNHG DLVAKKKAAA ANYYSSEQED TTASEDLMLD FDVGELLMSG INNPDSEFWK 240 ICHQLDDNNE GSKNYKWASS HHAPLWFSED YKDWMGDDDC FHH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-27	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269\|PubMed:9839469}.

Function -- GeneRIF ? help Back to Top
Peace plays a role in inducing the anthocyanin biosynthetic pathway in peach petals. [PMID: 24453228]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G405200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB897865	0.0	AB897865.1 Prunus persica Peace mRNA for R2R3 Myb transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007226590.1	0.0	transcription repressor MYB6
Swissprot	Q9S9K9	2e-61	MYB3_ARATH; Transcription factor MYB3
TrEMBL	M5XPD9	0.0	M5XPD9_PRUPE; R2R3 Myb transcription factor
STRING	EMJ27789	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-63	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Prupe.1G405200.1.p
Entrez Gene	18793268

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Uematsu C, et al. Peace, a MYB-like transcription factor, regulates petal pigmentation in flowering peach 'Genpei' bearing variegated and fully pigmented flowers. J. Exp. Bot., 2014. 65(4): p. 1081-94 [PMID:24453228] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]