PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G405100.1.p

Common Name

PRUPE_ppa015883mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 280aa MW: 31724.6 Da PI: 5.4872

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G405100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+++vk +G g+W++ +r+ g++R++k+c++rw++yl Prupe.1G405100.1.p 14 KGAWTALEDQILIEYVKDHGEGRWEKLSRETGLKRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++ Prupe.1G405100.1.p 67 RGNITEDEEDLIIRLHKLLGNR-WTLIAGRLP-GRTDNEIKNYWNSV 111 7999****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.005	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.35E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.63E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.114	62	116	IPR017930	Myb domain
SMART	SM00717	2.1E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	67	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-24	69	115	IPR009057	Homeodomain-like
CDD	cd00167	6.62E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGRSYRCDKD GLSKGAWTAL EDQILIEYVK DHGEGRWEKL SRETGLKRCG KSCRLRWLNY 60 LRPEIKRGNI TEDEEDLIIR LHKLLGNRWT LIAGRLPGRT DNEIKNYWNS VLRKKAQESH 120 SERSRNEWKT TKDTEKAVPS LKMDSHFIQN GLTPTSCINN EQLGTTNTLA EPFISGVEAT 180 NMEVKSDSSD GFLPITREND MTWNFIRDLN AGELGISEFL HTDFSKLCEL NTTIFDCTSG 240 CRNGSLMSTS TAEAPLKLQE WLNDWAADDN CLPEAAFGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-30	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G405100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007226921.1	0.0	trichome differentiation protein GL1
TrEMBL	M5Y7Z7	0.0	M5Y7Z7_PRUPE; Uncharacterized protein
STRING	EMJ28120	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-55	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Prupe.1G405100.1.p
Entrez Gene	18790574