PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G404700.1.p | ||||||||
Common Name | PRUPE_ppa026916mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23673.8 Da PI: 9.5824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.8 | 1.4e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+++++ +G+++Wk +a + g++R++k+c++rw +yl Prupe.1G404700.1.p 15 RGSWTAEEDQKLAQVIEIHGPKRWKFVATKAGLNRCGKSCRLRWMNYL 62 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 7e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Prupe.1G404700.1.p 68 RGNISDQEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.17 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.03E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-18 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.896 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.21E-9 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MIPLSRRSTR KEVNRGSWTA EEDQKLAQVI EIHGPKRWKF VATKAGLNRC GKSCRLRWMN 60 YLRPNIKRGN ISDQEEDLIL RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIKQR 120 ERQNRAVSKA EQESSDTKNI QIMEMNALTI GREDASKCEQ SFKSGFNGDE FFDCSSDEGP 180 LNLEWMNKFL EMDESWFTLH DI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 12 | 117 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G404700.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828544 | 1e-104 | FR828544.1 Rosa rugosa mRNA for putative MYB transcription factor (myb11 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020415207.1 | 1e-149 | transcription factor MYB114 | ||||
TrEMBL | A0A251RAS7 | 1e-148 | A0A251RAS7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220568.1 | 1e-145 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2148 | 32 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40330.1 | 9e-54 | myb domain protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G404700.1.p |
Entrez Gene | 18792128 |