PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G378200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 356aa    MW: 38928.4 Da    PI: 7.3753
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G378200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.8e-33117172460
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +rY+eClkNhAa++Gg+++DGCgEfmps geegt +alkCaAC+CHRnFHR+ev+ e
  Prupe.1G378200.1.p 117 IRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTLEALKCAACDCHRNFHRKEVDGE 172
                         79*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.0E-30117169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-24117170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-30118169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979119168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.31E-20257322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-31258323IPR009057Homeodomain-like
PROSITE profilePS500718.859259323IPR001356Homeobox domain
TIGRFAMsTIGR015653.6E-29261318IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MFKASVMDFR AQPQDNEMRT SGSLSYASSA HHLSTKESSP AAAAAAADHQ KRRVGIHNGN  60
NTYATSPHQT LDHHIQHPHP PLQPLIRDPD PDRALAGTPV PSTVLASGGP KSTSKIIRYR  120
ECLKNHAANI GGNVFDGCGE FMPSGEEGTL EALKCAACDC HRNFHRKEVD GETTAFSHGS  180
RRSSIMLSPL QLPPPLPSPS SALHHHHHHH QKFSMAPIIQ PMNVAFGSGG GGTESSSEDL  240
NVFQSNNAEG GLPMPPFAMS KKRFRTKFTQ EQKERMMEFA EKVGWRIQKQ DEEEVERFCA  300
EVGVKRQVLR VWMHNNKNSA KKQSDILTTP TTTSLSFENV EAEEEGGGEG GRDNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-262623191875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G378200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411509.10.0zinc-finger homeodomain protein 5 isoform X2
SwissprotQ9FRL51e-72ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A251R9D70.0A0A251R9D7_PRUPE; Uncharacterized protein
STRINGEMJ257100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-68homeobox protein 33