PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G341000.1.p
Common NamePRUPE_ppa002931mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 621aa    MW: 66546.9 Da    PI: 8.84
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-057496123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Prupe.1G341000.1.p 74 FICEVCNKGFQREQNLQLHRRGH 96
                        89*******************88 PP
2zf-C2H2130.0003150172123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Prupe.1G341000.1.p 150 WKCEKCSKRYAVQSDWKAHSKTC 172
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-77396No hitNo description
Gene3DG3DSA:3.30.160.607.0E-67396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.997496IPR007087Zinc finger, C2H2
PfamPF121713.1E-57496IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SMARTSM00355160115145IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-5138171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7145170No hitNo description
SMARTSM00355130150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV  60
IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ  240
ISSLQQDHSQ SSTAADILRL GGAGGAGAAR TGQFDHLLGS SFRPAAQSSA SFFLTAADQS  300
TQQQYHDQDQ DKSFQGLMQF SDNHHHLHQN NNNSNNPPHH HSAGANLFSL PFLSNNTTNT  360
TNNNNSATNN NLLISPDHFN TNVNGTTTAA GGSEGSHNLF SGHIVGGDHI SSGIPSLYST  420
NSNINNNNQQ QQHHASMAHM SATALLQKAA QMGSTNSSNN TTASLLRSFG SSSSATAKSD  480
RPGALVPSSL GGMFGSDQQD QSHLQDLMNS FANTGGSSIF VNASFGGYDA ATANRAINME  540
ETKLQQQNSL GVSNIGGADR LTRDFLGVGQ VVRNMSGGFS HQRSEHHSEQ QHGMDMSSLD  600
SESNAAAPSS QSFGGGGNFQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33146207364Zinc finger protein JACKDAW
5b3h_F1e-33146207364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G341000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4550951e-122AM455095.1 Vitis vinifera contig VV78X055432.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222011.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-141IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM5XVM90.0M5XVM9_PRUPE; Uncharacterized protein
STRINGEMJ232100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-114indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]