PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G313300.1.p
Common NamePRUPE_ppa009143mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 306aa    MW: 34307.4 Da    PI: 6.3023
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G313300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-182067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Prupe.1G313300.1.p 20 RGPWTLEEDTLLIHYIASHGEGHWNSLAKCAGLKRTGKSCRLRWLNYL 67
                        89********************************************97 PP
2Myb_DNA-binding50.83.9e-1673116146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T++E++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  Prupe.1G313300.1.p  73 RGNLTPQEQLMILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.861567IPR017930Myb domain
SuperFamilySSF466893.18E-3118114IPR009057Homeodomain-like
SMARTSM007171.6E-151969IPR001005SANT/Myb domain
PfamPF002498.2E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-232174IPR009057Homeodomain-like
CDDcd001676.70E-132267No hitNo description
PROSITE profilePS5129425.21268122IPR017930Myb domain
SMARTSM007175.4E-1572120IPR001005SANT/Myb domain
PfamPF002493.8E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2475121IPR009057Homeodomain-like
CDDcd001672.66E-1277116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAAVTKSACN PNEEEIELRR GPWTLEEDTL LIHYIASHGE GHWNSLAKCA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLMILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SKRFLDAVRC FWMPTLLQKM EQSSSSYLPT TLSSQNSASP SLSPNCSAPS  180
ISLPTSPPSK VSQIFDHPIN GNSSSVTSPS IFSSDSLISQ LPQTSERLTS PTHAFDHTVY  240
SSSPALNDCY YVDTSSGYAY DMEGPNLDPA SAICDFDNQQ FDCQMTAGDW MLDNMTDTLW  300
NMEGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G313300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223176.10.0transcription factor MYB62
SwissprotQ9C9G76e-86MYB62_ARATH; Transcription factor MYB62
TrEMBLM5XYM80.0M5XYM8_PRUPE; Uncharacterized protein
STRINGEMJ243750.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-85myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]