PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G307300.2.p

Common Name

PRUPE_ppa019842mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 465aa MW: 51667.7 Da PI: 6.4654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G307300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.5e-10	178	216	5	43
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 k rr+++NReAAr+sR+RKka++++Le+ L+ + Prupe.1G307300.2.p 178 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLSHLEQ 216 788*************************97666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-9	174	245	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-7	174	221	No hit	No description
PROSITE profile	PS50217	9.289	176	220	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.41E-22	178	230	No hit	No description
SuperFamily	SSF57959	9.14E-7	178	221	No hit	No description
Pfam	PF00170	9.6E-7	178	214	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	181	196	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-31	263	336	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MQSFKAASTN PELYSHSSFY FRGDDTNRNQ TRFTDLGELE QSATVFPHDD AVDLIPSSMF 60 SLKANNVAVV PNNLHYGALN TSTGCLDIGS TITGTGGGCV ETGHHQYMYH QQKGTTSSGN 120 GHFENWGDSA MADNSQQTDD TSTDVDTDDK NQLHGIPHGA LTVVDSMEQP RERSGDQKTL 180 RRLAQNREAA RKSRLRKKAY VQQLENSRLR LSHLEQELQR ARQQGMFIAT GLSGDNGHSM 240 AGNGALAFDL EYARWLDEHQ RLIHDMRSAV NSHTGDNELR ILVDSVMTHY DEIFRLKSIA 300 AKTDVFHMLS GMWKTPAERC FMWLGGFRSS ELLKILGNQL EPLTDQQLMG ICNLQQSSQQ 360 AEDALSQGME ALQQSLVDTL CSGTHGPTGS GNVADYMGQM AIAMGKLATL ENFLHQADLL 420 RQQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MQSFKAASTN PELYSHSSFY FRGDDTNRNQ TRFTDLGELE QSATVFPHDD AVDLIPSSMF  60
SLKANNVAVV PNNLHYGALN TSTGCLDIGS TITGTGGGCV ETGHHQYMYH QQKGTTSSGN  120
GHFENWGDSA MADNSQQTDD TSTDVDTDDK NQLHGIPHGA LTVVDSMEQP RERSGDQKTL  180
RRLAQNREAA RKSRLRKKAY VQQLENSRLR LSHLEQELQR ARQQGMFIAT GLSGDNGHSM  240
AGNGALAFDL EYARWLDEHQ RLIHDMRSAV NSHTGDNELR ILVDSVMTHY DEIFRLKSIA  300
AKTDVFHMLS GMWKTPAERC FMWLGGFRSS ELLKILGNQL EPLTDQQLMG ICNLQQSSQQ  360
AEDALSQGME ALQQSLVDTL CSGTHGPTGS GNVADYMGQM AIAMGKLATL ENFLHQADLL  420
RQQTLQQMHR ILTTRQAARA LLVISDYFSR LRALSSLWLA RPRD*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in the apical meristem, the floral meristem, each whorl of organ primordia, and in ovule primordia during wild-type flower development. {ECO:0000269\|PubMed:9990857}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G307300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007226716.1	0.0	transcription factor HBP-1b(c38) isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	M5Y7H4	0.0	M5Y7H4_PRUPE; Uncharacterized protein
STRING	EMJ27915	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-168	bZIP family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G307300.2.p
Entrez Gene	18793834

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]