PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G304700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 426aa MW: 47638.5 Da PI: 9.0682 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 140.3 | 1.5e-43 | 169 | 321 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa 70 g kdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k++ikel + + Prupe.1G304700.1.p 169 GNKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTSIKELKQHlnisplaayscstnanatststiT---- 255 78*************************************************************999999999987665443332211.... PP TCP 71 seceaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 a+++ss+++ns+ + + + + +++k++ + +a+esr +arararertrekm+ + Prupe.1G304700.1.p 256 ----AKMNSSTSENSEVAskiqetaNGDVHSIGTLEREKKNRKLCVVARESRVEARARARERTREKMMRT 321 ....222222222222223444443333333334444444444678888******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.6E-43 | 169 | 320 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.253 | 170 | 228 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.048 | 300 | 317 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MTMFPSSSSA SNYQRPFPCD TNQQPQLLEK SSTNIIDQHD HENPNSISHD DHHIRQYYSH 60 YSEDHQHQAP NNFLEHDGLL LSYLLSQQQL LVGSSSPNMN SATSHHVQAH DTTEISVVAS 120 NSNKKVMDRV DEDRTAPAAT SKGCSSKKKS NTSNGESKNA KAPRKRSSGN KDRHSKIYTA 180 QGPRDRRMRL SLQIARKFFD LQDMLGFDKA SKTIEWLFTK SKTSIKELKQ HLNISPLAAY 240 SCSTNANATS TSTITAKMNS STSENSEVAS KIQETANGDV HSIGTLEREK KNRKLCVVAR 300 ESRVEARARA RERTREKMMR TRSGLDQYQN LRKQSPDHDQ VPQNPNNDQF SGGHYLWSSN 360 CPNDQLFEPG MMMNSMVMSI NHHDEKVVGS TTIPSGANSE DYDFPSFPGN WGQINNSKNT 420 TGLSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G304700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008243405.1 | 0.0 | PREDICTED: transcription factor TCP18 | ||||
TrEMBL | A0A251R883 | 0.0 | A0A251R883_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243405.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 8e-33 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G304700.1.p |