PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G284900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 232aa MW: 26614 Da PI: 5.1747 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.5 | 1.3e-32 | 41 | 171 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 +G+rF+P+++++vv+yL +k+ g++l+++++ike+ +y+++P +Lp k+ + +e ++F+ +++ y++ gk ++r+tksgyW g++ Prupe.1G284900.2.p 41 VGYRFDPSEDQIVVFYLFNKILGRELPINDIIKEISVYEHDPDELPsGdfKHGVDCNEAFYFAYTEQVYSSrGKITRRTTKSGYWDLDGEE 131 7*********************************************5444444466799********99963777888************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev+ + ++ +v k++vf+kg+ap+g +td +mheyr+ Prupe.1G284900.2.p 132 EEVKYRnGDITVMFEKVMVFHKGTAPNGIETDFIMHEYRV 171 ***99845667999************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-32 | 39 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.928 | 39 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-15 | 41 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MPYSSSFIEQ SFSHSSPTQT QTKAQCSKIE NGKKEAEIHL VGYRFDPSED QIVVFYLFNK 60 ILGRELPIND IIKEISVYEH DPDELPSGDF KHGVDCNEAF YFAYTEQVYS SRGKITRRTT 120 KSGYWDLDGE EEEVKYRNGD ITVMFEKVMV FHKGTAPNGI ETDFIMHEYR VNPLIVPTHV 180 LNDSIRAKIE RYVVCRIIQE GVSNFPLTNF HQDGLLGLLK KQNQIDMTEI A* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-22 | 35 | 197 | 10 | 165 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G284900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221514.1 | 1e-168 | PREDICTED: NAC transcription factor 29-like isoform X2 | ||||
TrEMBL | A0A251R4N8 | 1e-172 | A0A251R4N8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221511.1 | 1e-161 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-27 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G284900.2.p |