PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G267300.1.p
Common NamePRUPE_ppa018002mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 322aa    MW: 36193.9 Da    PI: 4.4513
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G267300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1984138357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  Prupe.1G267300.1.p  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 138
                         56689***********************************************995 PP
2HD-ZIP_I/II127.27.2e-4184175293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e++
  Prupe.1G267300.1.p  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEID 174
                         9**************************************************************************************9987 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.1G267300.1.p 175 S 175
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.59E-1971141IPR009057Homeodomain-like
PROSITE profilePS5007117.31379139IPR001356Homeobox domain
SMARTSM003896.3E-1881143IPR001356Homeobox domain
CDDcd000864.24E-1882140No hitNo description
PfamPF000462.2E-1684137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1986147IPR009057Homeodomain-like
PRINTSPR000312.0E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000312.0E-6119135IPR000047Helix-turn-helix motif
PfamPF021831.4E-16139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGGKLYSAS DMNVIFQNEK LPCSSDVLES IWVPTSSSSF HGSNSMVHFE SASGEDSLDR  60
SFFRPIDKEN GDDDYDASLN QPGKKRRLTV DQVQFLEKNF EVENKLEPER KAQLAKELGL  120
QPRQVAIWFQ NRRARFKNKQ LEKEYDSLKA SFDKLKADHD NLLKENGSLK NEIDSLKDML  180
ILKDKGKPGK RNLELHDANN IISSDVNPQS ATPNAAASDN VPMVVCKQED ASSAKSDVFD  240
SDSPHCTENH SSLLEPADSS HVFEPAEQSD FSQDEDDDLS RTLLPPPYLK LEDSCYDEPP  300
ASSNNFVFPM EDQQPFCFWP Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G267300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225072.10.0homeobox-leucine zipper protein HAT5
TrEMBLM5XL820.0M5XL82_PRUPE; Uncharacterized protein
STRINGEMJ262710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-40homeobox 1