PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G223100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 399aa    MW: 46717.8 Da    PI: 9.8789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G223100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.2e-2041126290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          YneY+ ++G s+r++++++  + g + + +fvCskeg+re+++   +++   r etrtgCkak++  +e  ++w+ ++++ +HnH+la
  Prupe.1G223100.1.p  41 LYNEYGASIGLSIRRKQKRYD-KYGVVRQLNFVCSKEGFREDSDPC-KEKAIDRLETRTGCKAKIRFLLE-GDVWKFSTFNPDHNHKLA 126
                         7***************99998.7888****************9988.89999*****************9.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1741126IPR004330FAR1 DNA binding domain
PfamPF044344.5E-4356376IPR007527Zinc finger, SWIM-type
SMARTSM005750.0061356380IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKKTPKATIK KKNPTFGNLE ETSDENLYGK IVYNEQEAYD LYNEYGASIG LSIRRKQKRY  60
DKYGVVRQLN FVCSKEGFRE DSDPCKEKAI DRLETRTGCK AKIRFLLEGD VWKFSTFNPD  120
HNHKLARLDE RQFLQSNRDA QSLINLFKHK QVEDPVFFYT MQIDQENRMT NLFGGMDAMA  180
NAISTVFLGT CHFLCTWHIS RNATLKLASS YAISEFKRLF NKCLEGGETK FKFECTWNEM  240
ISEFDLADNT WLKTLYQLRE KWCPVFSLDT FTVRIKASQR SQSMNNVFHH MCTKTMRLTE  300
FVHHYDKQTH GMRSRELEET FRHNQGLPSR AAIKSGLLLH AANIYTRKKN IYLRLSCKMF  360
ESMGLLCRHA LRVLNVKEVT KIPSQYILKR WTKEAKKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G223100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021802166.11e-131protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251R1G80.0A0A251R1G8_PRUPE; Uncharacterized protein
STRINGEMJ230780.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-33FAR1-related sequence 1