PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G217700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 21909.8 Da PI: 7.314 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.7e-10 | 53 | 100 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L++l+P + ++ + Ka L + ++Y++ Lq Prupe.1G217700.1.p 53 SHSLAERARREKINVRMKLLQSLVPGC----DQINGKAHALDEIIKYVQLLQ 100 8*************************9....9*****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.54E-7 | 47 | 104 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-15 | 47 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.151 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 50 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 53 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-5 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MVSEEEGERK GKKQRKQNGS EAKKQSKVAA AFAERVQRNG VRVKARRGEA TDSHSLAERA 60 RREKINVRMK LLQSLVPGCD QINGKAHALD EIIKYVQLLQ NQVECLAAEL AFVDAMLYDD 120 CELNPSTNPC ASDQRLCCLE PPSSVPFRSL ADAAPTPCTF ASLLLTEDQK ASLIPQVQDG 180 GSFEDVGKHP ARLDHSCTF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G217700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008222403.1 | 1e-124 | PREDICTED: transcription factor bHLH137-like | ||||
TrEMBL | A0A251R1H1 | 1e-144 | A0A251R1H1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008222403.1 | 1e-124 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17860 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 2e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G217700.1.p |