PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.1G168600.1.p | ||||||||
Common Name | PRUPE_ppa022382mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 406aa MW: 44440.9 Da PI: 7.013 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.2 | 1.4e-15 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+s r+++f kR++g+lKK +ELS+LCd+ ii+++++k Prupe.1G168600.1.p 11 ITNDSARKTSFRKRKEGLLKKLSELSILCDVSGFAIIYGPDDK 53 89*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.624 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.5E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.02E-29 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 3.4E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-14 | 11 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MTRKKVKLAW ITNDSARKTS FRKRKEGLLK KLSELSILCD VSGFAIIYGP DDKEPVVWPS 60 RPIAEELLAR FQRIPEVDRC KKMMNQETYL NDRLAKLKEQ LTKTHKKNKE MEMNIIMSQI 120 QEGKPLNEFG TCELTCLVLF LEEKIKEIWK RIKYLGHEAN LPLGAFSPHE GGDAENTTVP 180 DEWNPTESLY NYFSKENGKQ SQNMSVVTAS ISNVMGNMGL PPHASFGNTS GINVSKEMRL 240 LSENFGMSRS SDIGFMYGNI KGDMSNVGSD FGTSFGRFGD RKYRNDIEWS YENLGASSDG 300 SGIGLPHVNN GLLQTHYGNV NGSSSGNVRN DAEDIGGING GYDNIEGHIP HPSNITGGFG 360 SNVGVPHGAG SDTGLPNGLS GESNAGSDAG VLNDISKTRK RSFSP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAWITNDSARKTSFRKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.1G168600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409790.1 | 0.0 | agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A251QYV6 | 0.0 | A0A251QYV6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22519 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11014 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-27 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.1G168600.1.p |
Entrez Gene | 18787839 |