PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G125700.1.p | ||||||||
Common Name | PRUPE_ppa002003mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 751aa MW: 86033.2 Da PI: 7.1171 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.6 | 1.4e-20 | 73 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt +++ HnH Prupe.1G125700.1.p 73 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNH 163 6***************9998874556679*******************9*******************98887676789************ PP FAR1 88 ela 90 el Prupe.1G125700.1.p 164 ELL 166 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-17 | 73 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-22 | 289 | 381 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.829 | 553 | 601 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.8E-6 | 575 | 599 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-5 | 576 | 603 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MRFLRELLKK SKCVGDHSSK MSEGTSLGME DLSQDDIGTI EETAEDTILS RQTSVNLVPF 60 VGQRFVSQEA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG VTRRDFTCHR GGYPQMKPSE 120 DGKMQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNI HNHELLKSNE VRLLPAYCSI 180 STDDKSRICM FAKAGMSVRQ MLRLMELEKG VKLGCLPFTE IDVRNLLQSF RNVDRDNDAI 240 DLIAMCKKMK DENPNFKYEF KIDGHNRLEH IAWSYASSVQ LYEAFGDTTV FDTTHRLDAY 300 DMLLGIWLGV DNHGMTCFFG CVLLRDENIQ SFSWALKTFL GFMKGKAPQT MLTDHNMWLK 360 EAIAVDVPQS KHAFCIWHIV AKFSDWFSVL LGSRYDDWKA EFHRLFNLDF VEDFEERWRE 420 MVNEFGLHTN KHVISLYALR NFWALAYLRH YFFAEMMSTS QAESINAFIQ RFLSAQSQLD 480 RFVEQVADIV DYNDRVGAKQ KMQRKMQRVC LKTGSPIESH AASVLTPYAF GKLQEELVLA 540 PQYASLLVDE GCFQVRHHTE EDGGCKVVWI PCQGHISCSC YQFEFSGILC RHVLRVLSTN 600 NCFHIPDQYL PTRWCGVSSS STNTFETATI MKDNSEKIHL LESLASTLVT ESVETEDRLD 660 AACEQIGMAL SRIKDLPRTT HNAIDIVYNC PSESLILQDV EEADGIIRFT VGNSHESVTL 720 GKLKERRPRD IVEISRKRRH CSGPCCLSVQ * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G125700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020410484.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 isoform X1 | ||||
Refseq | XP_020410485.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11 isoform X1 | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A251QZE3 | 0.0 | A0A251QZE3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ26407 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G125700.1.p |
Entrez Gene | 18790443 |
Publications ? help Back to Top | |||
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