PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G068400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27436.3 Da    PI: 9.6748
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G068400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-1991145256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Lee F ++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Prupe.1G068400.1.p  91 RKKLRLTKEQSTLLEESFSRHSTLNPARKQSLAEQLNLKPRQVEVWFQNRRARTK 145
                         678899***********************************************98 PP
2HD-ZIP_I/II115.43.3e-3791179190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq++lLEesF+++++L+p rK++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+ k+++++l +en+rL+ke + L+ +
  Prupe.1G068400.1.p  91 RKKLRLTKEQSTLLEESFSRHSTLNPARKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFWKKRCESLGDENRRLKKELQGLK-S 179
                         69***********************************************************************************998.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-1978148IPR009057Homeodomain-like
PROSITE profilePS5007117.49187147IPR001356Homeobox domain
SMARTSM003897.1E-1689151IPR001356Homeobox domain
PfamPF000464.2E-1691145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1891145IPR009057Homeodomain-like
CDDcd000861.93E-1591148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PfamPF021831.5E-7147180IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-14147192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGGDEEACNT KLALGLGVGE YASRQEMRKK ENPSVCLDLS FALCPKQEVA TLGYHMENRS  60
SLRAMDEDEE SERSIGTNNK SIIMNNKNGV RKKLRLTKEQ STLLEESFSR HSTLNPARKQ  120
SLAEQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFWKKRC ESLGDENRRL KKELQGLKSL  180
NKNEASPLYI QIPKATMLSM CPPCERMVKA HHHNQAAAKN TEDLTVVRKS NKLQGGFDGT  240
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G068400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020411211.11e-180homeobox-leucine zipper protein HAT22
SwissprotP466652e-51HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251QUI11e-179A0A251QUI1_PRUPE; Uncharacterized protein
STRINGEMJ280931e-152(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-53HD-ZIP family protein