PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.1G051300.1.p | ||||||||
Common Name | PRUPE_ppa024234mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29674.3 Da PI: 9.1489 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+++ar g++R +k+c++rw +yl Prupe.1G051300.1.p 23 KGPWTAEEDGLLTEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 76 | 120 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Prupe.1G051300.1.p 76 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.352 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.83E-30 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-15 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.48E-10 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 23.743 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 76 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-24 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-9 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MYLGMMAGHH MGWGIIEEEG WRKGPWTAEE DGLLTEYVKL HGEGRWNSVA RLAGLKRNGK 60 SCRLRWVNYL RPELKRGQIT PHEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH 120 FKKKAKVPSD ASEKAKNRFL RRKQFHNQQH QQQQQHLQVN QEEVKRILAL LDENNDTKMP 180 CFWPQVKQGM ETISTYPHHT TDHQEQCFNY SMLNGNVSVP EASNNEDNFL WDGLWNLNDV 240 HGNFNSTCAT GKAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 23 | 125 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.1G051300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT323921 | 1e-114 | KT323921.1 Morus alba var. multicaulis isolate LOC122724841 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221842.1 | 0.0 | myb-related protein 305 | ||||
TrEMBL | M5XC73 | 0.0 | M5XC73_PRUPE; Uncharacterized protein | ||||
STRING | EMJ23041 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-85 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.1G051300.1.p |
Entrez Gene | 18788349 |