PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G051100.1.p
Common NamePRUPE_ppa017942mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 270aa    MW: 31350.1 Da    PI: 9.0127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G051100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-192370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll+++v+ +G g+W+++ar  g++R +k+c++rw +yl
  Prupe.1G051100.1.p 23 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                        79********************************************97 PP
2Myb_DNA-binding51.52.3e-1676120147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Prupe.1G051100.1.p  76 RGQITPNEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8161874IPR017930Myb domain
SuperFamilySSF466892.89E-3020117IPR009057Homeodomain-like
SMARTSM007171.1E-162272IPR001005SANT/Myb domain
PfamPF002492.2E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-242477IPR009057Homeodomain-like
CDDcd001675.36E-122570No hitNo description
SMARTSM007171.7E-1375123IPR001005SANT/Myb domain
PROSITE profilePS5129419.50675125IPR017930Myb domain
PfamPF002498.1E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2478124IPR009057Homeodomain-like
CDDcd001673.69E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYLGVMAGHQ MGWGIIEEEG WRKGPWTAEE DRLLIEYVRV HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PNEESIIVEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKVPSD ASEKAKTRLL RRQQFHQQQQ QQQQQQQQQQ QQQLQLINQA EVKRIMAFLD  180
ENENNKISSW PQVKQDMDTS SAAYPHNTAD HQEQGFFYSM LNGNVYVPED SSNEDSFLWD  240
GLWNLDDVHG NFGTAAGKAS FHNLVVPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-272312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G051100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227645.10.0myb-related protein 305
TrEMBLM5XSD50.0M5XSD5_PRUPE; Uncharacterized protein
STRINGEMJ288440.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-92myb domain protein 305