PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3s76_20V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 461aa    MW: 51774.1 Da    PI: 8.1232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3s76_20V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-12406454247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+ eE ell+++v+++G+g+Wk I +       gRt+ ++k++w+++
  Pp3s76_20V3.2.p 406 KKWSNEEVELLKRGVQEHGKGHWKEILNNNTdafRGRTEVDLKDKWRNL 454
                      58****************************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.969400459IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-14401454IPR009057Homeodomain-like
SuperFamilySSF466892.17E-14402455IPR009057Homeodomain-like
SMARTSM007172.2E-8404457IPR001005SANT/Myb domain
CDDcd116601.60E-18406456No hitNo description
PfamPF002491.1E-9406454IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MERTPREGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTGVLRL RQMLLIRDLT  60
QQLGDPIPNK IDVDLALQYL EGLENSLASK PAEELEESVR GGLLQPALER KDLERPLLEL  120
KSELRTSLGE KRVDAQQAKV IRDEFRALAA KAWILLGPLV LEEFAASTIA GKQSLRAQSS  180
VRSPHPVATP ILRIAASMTH KKPWSTGGSS SWKEHFEHHK IVEVKRSVVV LEDVHHSLKK  240
LVKDQAEVCK QHVRLKNPGT TSHCLGLSVL NLPPLAHAPG LEDDNMYEDK DRPSSNAHCS  300
QLSSENPHPS NSQDPYSSPS HPLLLDPGLH NTKETACALE SSWSPSKITG RVGFMLGGQR  360
EKRPFQEIDL CGEVLICNSE QTVRECKHGE SLLGIGSGST QRRTQKKWSN EEVELLKRGV  420
QEHGKGHWKE ILNNNTDAFR GRTEVDLKDK WRNLEKYERL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1I9J90.0A0A2K1I9J9_PHYPA; Uncharacterized protein
STRINGPP1S208_2V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-12MYB_related family protein