PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3s241_30V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 396aa    MW: 44498.7 Da    PI: 8.1067
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3s241_30V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13341389247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       ++W+ eE ell+++v+++G+g+Wk+I +       gRt+ ++k++w+++
  Pp3s241_30V3.2.p 341 KKWSNEEVELLKRGVQEHGKGHWKKILNDNAdafRGRTEVDLKDKWRNL 389
                       58***************************999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.562335394IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-14336389IPR009057Homeodomain-like
SuperFamilySSF466891.12E-14337390IPR009057Homeodomain-like
SMARTSM007175.1E-9339392IPR001005SANT/Myb domain
PfamPF002493.1E-10341389IPR001005SANT/Myb domain
CDDcd116601.14E-19341391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MERTPRGGKE LGFKLIHAWI WEYVLKHTVG VNIIQELTKL LPFPTGVLRL RQMLLIRDLT  60
QQLGNPIPNK IDVDLALLGF IGSLILEEFA ASTIAGKRSL RAQSSVRSPH PVAISDSEDR  120
SFHDTQETLV DRRFEQLEGA LRASQSELQN ILDVKIVEVK RSVVVMEDAH HSLKKLVKDQ  180
AEVCKQHVRL KNPGTTSQCL GLSVLNLPPL AHAPGLKDDN MYEDKDRPSS NAHCSQLSSE  240
YPHPSNSQDP YSSPSHPLLL DPGLHNTKET ACALESSWSP SKITVRVGFM LGGQREKRPF  300
QEIDLCGEVL ICNSEQTVRE CKHGESLLGI GSGSTQRRTQ KKWSNEEVEL LKRGVQEHGK  360
GHWKKILNDN ADAFRGRTEV DLKDKWRNLE KYERL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1KLH70.0A0A2K1KLH7_PHYPA; Uncharacterized protein
STRINGPP1S966_1V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-12MYB_related family protein