PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_7400V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

CPP

Protein Properties

Length: 1265aa MW: 137658 Da PI: 7.5117

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_7400V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.7	3.2e-15	782	820	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag +C +C C dC+Nk e Pp3c9_7400V3.3.p 782 CKRCNCKKSKCLKLYCECFAAGLYCVGSCACRDCFNKPE 820 79**********************************976 PP
2	TCR	51	2.9e-16	866	905	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+C+Nk Pp3c9_7400V3.3.p 866 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCMNKY 905 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.0E-14	780	821	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.332	781	906	IPR005172	CRC domain
Pfam	PF03638	7.5E-11	783	818	IPR005172	CRC domain
SMART	SM01114	2.3E-17	866	907	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.3E-11	868	904	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 1265 aa Download sequence Send to blast
MMTRGIKAAP EKVDRELESG PDMGSPARRE PIPPVSDMQD SPLFKYLCEL SPIQPAKSVH 60 HAQTYNEMTF PQEHRIFASP RSARRSSSSS LKRFVAAERF SAQAQAEGRE SLGWHQTPTF 120 SRSTLSDGAP SSSPLKRSSG DHQVTPCSRR QTEALASSQS DGAKVEVSRD DVYVAEDPGG 180 QGKFGSSIHL KPEPASCEMD RTAVVNARFQ TQFTDYHQLD PAVSAAMPSE VVSCIDGKDE 240 MLEVTRTEHN YATERRQSTS SLISHPIDCV LPSQESKCHE QSDHRRVSVT SSSHIEDHGL 300 SFSTVAKGSP ELDRETTAMA YFLAGNQDLG QDTGEEWSED SSEVVVPRLP LRPTPGYSVK 360 PSDMINERVV KQEKRMVDAI TPKSGLVPST EDGHDTDTIL ATENVNHQQS VLSQRVDNAG 420 QRGFRRRCLD FDASVARRKS LGSMSGRKSL GSRLKDCSGI SVADDSNVSG FGDVAPASSD 480 ATTTRVRAPP NDFSNSNDTS RVDSDSGLHT REAGSPVCAD TFGTTAKLPL TSCSHQKNMD 540 VLNAKTGEAH SRKVQNSGAS PAGTPPEGVR RSPRNRPTGI GLHLNSLTSS MSFKRDYSSV 600 RGESSKGVLA TVLGLQPVAR TDLTEDSLSE GLGSTGYSAN LNQNFNSGVD RQALDNSNNG 660 LTKKLDYHSQ VDSRTLMELN GAETTLPASS IKRVNIPAPD FTSLNIENLS PLEEPFSLTP 720 AAHLPRLVSP RGQKRPQPHH QELMQQPEGE AVDELLDSPQ SAKRRRRKST VSSQSERSGD 780 GCKRCNCKKS KCLKLYCECF AAGLYCVGSC ACRDCFNKPE YIETVINTRQ QIESRNPLAF 840 APKIVQGAES SPVPGDEVLD TPASARHKRG CNCKKSLCLK KYCECYQAGV GCSEGCRCEG 900 CMNKYGRKEG PEGDEKDGEQ ANFVREDSQS EDPIELLNRM SGKTDRLRDN STKPNLSPNT 960 PTFEYDLHGR PMHSLRTSLR KRIDPSDELC HSPLAQPVSR PSKSPTRFAH ALDAFHLVPS 1020 YQGHSDADFS MSGAGDSPMT TPTFARMGHL SPRWDGLGDL CTLTPMQTLA PLRPTPGSSC 1080 ITVERPGASP AFSSHLTESP YQAAASTNVH QRHASSRHWS PHSPRFRQPA PRSPFDTPRQ 1140 SQLSCTDQGH PTPLTPAMQS YQLLSGKNLQ SELELAKVNV ADDDGTPEFT KYADETRDSS 1200 PSRSTVTKSS SPKQKRVTPP RYSGNREPSN SSNGGCGSNS LASSPVSRNA RKFILQALPT 1260 FTND*

Sequence ? help Back to Top

Protein Sequence Length: 1265 aa Download sequence Send to blast

MMTRGIKAAP EKVDRELESG PDMGSPARRE PIPPVSDMQD SPLFKYLCEL SPIQPAKSVH  60
HAQTYNEMTF PQEHRIFASP RSARRSSSSS LKRFVAAERF SAQAQAEGRE SLGWHQTPTF  120
SRSTLSDGAP SSSPLKRSSG DHQVTPCSRR QTEALASSQS DGAKVEVSRD DVYVAEDPGG  180
QGKFGSSIHL KPEPASCEMD RTAVVNARFQ TQFTDYHQLD PAVSAAMPSE VVSCIDGKDE  240
MLEVTRTEHN YATERRQSTS SLISHPIDCV LPSQESKCHE QSDHRRVSVT SSSHIEDHGL  300
SFSTVAKGSP ELDRETTAMA YFLAGNQDLG QDTGEEWSED SSEVVVPRLP LRPTPGYSVK  360
PSDMINERVV KQEKRMVDAI TPKSGLVPST EDGHDTDTIL ATENVNHQQS VLSQRVDNAG  420
QRGFRRRCLD FDASVARRKS LGSMSGRKSL GSRLKDCSGI SVADDSNVSG FGDVAPASSD  480
ATTTRVRAPP NDFSNSNDTS RVDSDSGLHT REAGSPVCAD TFGTTAKLPL TSCSHQKNMD  540
VLNAKTGEAH SRKVQNSGAS PAGTPPEGVR RSPRNRPTGI GLHLNSLTSS MSFKRDYSSV  600
RGESSKGVLA TVLGLQPVAR TDLTEDSLSE GLGSTGYSAN LNQNFNSGVD RQALDNSNNG  660
LTKKLDYHSQ VDSRTLMELN GAETTLPASS IKRVNIPAPD FTSLNIENLS PLEEPFSLTP  720
AAHLPRLVSP RGQKRPQPHH QELMQQPEGE AVDELLDSPQ SAKRRRRKST VSSQSERSGD  780
GCKRCNCKKS KCLKLYCECF AAGLYCVGSC ACRDCFNKPE YIETVINTRQ QIESRNPLAF  840
APKIVQGAES SPVPGDEVLD TPASARHKRG CNCKKSLCLK KYCECYQAGV GCSEGCRCEG  900
CMNKYGRKEG PEGDEKDGEQ ANFVREDSQS EDPIELLNRM SGKTDRLRDN STKPNLSPNT  960
PTFEYDLHGR PMHSLRTSLR KRIDPSDELC HSPLAQPVSR PSKSPTRFAH ALDAFHLVPS  1020
YQGHSDADFS MSGAGDSPMT TPTFARMGHL SPRWDGLGDL CTLTPMQTLA PLRPTPGSSC  1080
ITVERPGASP AFSSHLTESP YQAAASTNVH QRHASSRHWS PHSPRFRQPA PRSPFDTPRQ  1140
SQLSCTDQGH PTPLTPAMQS YQLLSGKNLQ SELELAKVNV ADDDGTPEFT KYADETRDSS  1200
PSRSTVTKSS SPKQKRVTPP RYSGNREPSN SSNGGCGSNS LASSPVSRNA RKFILQALPT  1260
FTND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-21	775	912	4	126	Protein lin-54 homolog
5fd3_B	6e-21	775	912	4	126	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	762	767	KRRRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384566.1	0.0	uncharacterized protein LOC112286675 isoform X2
TrEMBL	A0A2K1K2D4	0.0	A0A2K1K2D4_PHYPA; Uncharacterized protein
STRING	PP1S220_14V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-61	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Pp3c9_7400V3.3.p