PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_3300V3.2.p
Common NamePHYPADRAFT_169585
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 472aa    MW: 51385.5 Da    PI: 6.6979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_3300V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11395440655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR +i +++ +L++l+P+     +k  + +++L ++veY+ksLq
  Pp3c9_3300V3.2.p 395 SIAERVRRTKISERMKKLQDLVPSM----DKQTNTSDMLDETVEYVKSLQ 440
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.342389439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-15392455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11393444No hitNo description
Gene3DG3DSA:4.10.280.101.7E-16394458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13395445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8395440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MCGKSVAVMD GAASTMIQSH RGTSQASYSS GRSAVDEEIS AMLHSGNYSH ISQAPLAVSV  60
GLEHFPYSVY QGYPGNQTRP VPTTQRNTNM PRGEIGDGNA HVGPLLHRGS PPRHSTFNLE  120
EKYVLEAKSE ALDANVLRNG ATYGTIYENS RPSAMSTTVP LLHRYHSAPA STYLTQMNEE  180
QIGNTVMSSI FTDGGLTPIT ENMDVERLGC GNSNSNEFEH YLAPENDFSR RAAFSALHRE  240
EATPDSFATT FQNSKNAVLC QSSLSSAGLS QPNISMQDRM AENGSEKNSS RNSDDNNHLI  300
SGYAASIYSQ EDCHWKSPTS PAKRQRGLDG ESETSSGSVE GSTYRKSQQG GLIRHMSLPH  360
STNGDSSSPG VEDNTFHTVP MRTRAKRGCA THPRSIAERV RRTKISERMK KLQDLVPSMD  420
KQTNTSDMLD ETVEYVKSLQ RQVQELSDTV VRLEAAAAQK VSNTSHSPEI A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.87190.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385117.10.0transcription factor bHLH128-like isoform X1
RefseqXP_024385118.10.0transcription factor bHLH128-like isoform X1
RefseqXP_024385119.10.0transcription factor bHLH128-like isoform X1
TrEMBLA9TEC70.0A9TEC7_PHYPA; Predicted protein
STRINGPP1S213_60V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-33bHLH family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]