PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_25400V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 791aa    MW: 85715.1 Da    PI: 6.8767
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_25400V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14309368155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Pp3c9_25400V3.3.p 309 SVYRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 368
                        78*******************544454478446**********99************987 PP
2AP246.68.3e-15413462355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c9_25400V3.3.p 413 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKYRG 462
                        9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-18309375No hitNo description
SuperFamilySSF541711.9E-15309377IPR016177DNA-binding domain
PfamPF008475.5E-11309368IPR001471AP2/ERF domain
SMARTSM003804.8E-26310382IPR001471AP2/ERF domain
PROSITE profilePS5103218.413310376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-13310376IPR001471AP2/ERF domain
PRINTSPR003672.5E-5311322IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17411472IPR016177DNA-binding domain
CDDcd000186.25E-22411472No hitNo description
SMARTSM003801.9E-28412476IPR001471AP2/ERF domain
PROSITE profilePS5103218.834412470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-17412470IPR001471AP2/ERF domain
PfamPF008476.6E-10413462IPR001471AP2/ERF domain
PRINTSPR003672.5E-5452472IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MAKRCDGPFG CTADRWQQQR AMQSDGGVHQ HTFLMTNQLS QLAGNGGTRE QQMTGSHCHY  60
DMQGTAAENC EDPKLEDFLG GASLGGQYAD REAQQQQLDS LYYSAGTTAT SYVQDNQSRI  120
NVNLPYSLQQ GAGSLHDVPS SFRIAYGGVP DQSRLSSPHN YEHPHTRSQP ELQGNNLLSG  180
TRLHPQNLMK ATLNRSTTAE LLSHSALELP SGGSLNQNSE DPGLNMWLRH QATAEKTALT  240
NLACLPPLTL SMSAGSHQSS VYSPAQTAGL LTTADYPTGL EPRKRGAGRS DNKDPSPRKS  300
IDTFGQRTSV YRGVTRHRWT GRYEAHLWDN TCRKEGQTRK GRQVYLGGYD KEDKAARAYD  360
LAALKYWGVS TTINFTLDTY EQELEEMKNM SRQEYVASLR RKSSGFSRGA SMYRGVTRHH  420
QHGRWQARIG RVAGNKDLYL GTYSTQEEAA EAYDIAAIKY RGINAVTNFH ISRYLANKIQ  480
EAAVNDHPGL ESIEAAKEGE LSASVISTPL QYSGQAQTAL MIELSQIDDD HQTTTHSTGT  540
TELLTTEVLS GQGGISKNLH DLQMLYQQQA RNSWGSSSQG DSQRGWLGFG VDSMRAPNTQ  600
SKFPAPTSGT SLRNLMGLEA FPQDRNAGAG ESSCSANQAL MGHGMQSSSS MISSSGFQGG  660
GSGVYQSGDG RTLNSPPMSN SVYPQQQQGS LDRGAVVDSP KNSVDESEEA SSKSSGYDPV  720
LQGDLSRSGV LYLSPGSGSK GKMASYVESN SMSPWIGSNS TTVQGLTERS NLSMGGHMGS  780
GPIFTQSWNE *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22080.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755910.0AB675591.1 Physcomitrella patens APB3 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385086.10.0uncharacterized protein LOC112286917 isoform X1
TrEMBLA0A2K1K4L00.0A0A2K1K4L0_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-108AINTEGUMENTA-like 5