PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_25400V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 837aa    MW: 90563.2 Da    PI: 6.7745
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_25400V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.7e-14355414155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Pp3c9_25400V3.2.p 355 SVYRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 414
                        78*******************544454478446**********99************987 PP
2AP246.58.9e-15459508355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c9_25400V3.2.p 459 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKYRG 508
                        9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-15355423IPR016177DNA-binding domain
CDDcd000181.04E-18355421No hitNo description
PfamPF008475.9E-11355414IPR001471AP2/ERF domain
SMARTSM003804.8E-26356428IPR001471AP2/ERF domain
PROSITE profilePS5103218.413356422IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-13356422IPR001471AP2/ERF domain
PRINTSPR003672.8E-5357368IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-17457518IPR016177DNA-binding domain
CDDcd000184.78E-22457518No hitNo description
SMARTSM003801.9E-28458522IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-17458516IPR001471AP2/ERF domain
PROSITE profilePS5103218.834458516IPR001471AP2/ERF domain
PfamPF008477.1E-10459508IPR001471AP2/ERF domain
PRINTSPR003672.8E-5498518IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MSQNHGSNLG GYQNSENNCY NSIRSSGEGS NTISGQGLER MQSNGSLCIV EALSRSHAAD  60
RWQQQRAMQS DGGVHQHTFL MTNQLSQLAG NGGTREQQMT GSHCHYDMQG TAAENCEDPK  120
LEDFLGGASL GGQYADREAQ QQQLDSLYYS AGTTATSYVQ DNQSRINVNL PYSLQQGAGS  180
LHDVPSSFRI AYGGVPDQSR LSSPHNYEHP HTRSQPELQG NNLLSGTRLH PQNLMKATLN  240
RSTTAELLSH SALELPSGGS LNQNSEDPGL NMWLRHQATA EKTALTNLAC LPPLTLSMSA  300
GSHQSSVYSP AQTAGLLTTA DYPTGLEPRK RGAGRSDNKD PSPRKSIDTF GQRTSVYRGV  360
TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV YLGGYDKEDK AARAYDLAAL KYWGVSTTIN  420
FTLDTYEQEL EEMKNMSRQE YVASLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  480
NKDLYLGTYS TQEEAAEAYD IAAIKYRGIN AVTNFHISRY LANKIQEAAV NDHPGLESIE  540
AAKEGELSAS VISTPLQYSG QAQTALMIEL SQIDDDHQTT THSTGTTELL TTEVLSGQGG  600
ISKNLHDLQM LYQQQARNSW GSSSQGDSQR GWLGFGVDSM RAPNTQSKFP APTSGTSLRN  660
LMGLEAFPQD RNAGAGESSC SANQALMGHG MQSSSSMISS SGFQGGGSGV YQSGDGRTLN  720
SPPMSNSVYP QQQQGSLDRG AVVDSPKNSV DESEEASSKS SGYDPVLQGD LSRSGVLYLS  780
PGSGSKGKMA SYVESNSMSP WIGSNSTTVQ GLTERSNLSM GGHMGSGPIF TQSWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22080.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755910.0AB675591.1 Physcomitrella patens APB3 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385086.10.0uncharacterized protein LOC112286917 isoform X1
TrEMBLA0A2K1K4L00.0A0A2K1K4L0_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-108AINTEGUMENTA-like 5