PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_25400V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family AP2
Protein Properties Length: 744aa    MW: 80421.4 Da    PI: 6.771
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_25400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.2e-14262321155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Pp3c9_25400V3.1.p 262 SVYRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 321
                        78*******************544454478446**********99************987 PP
2AP246.77.7e-15366415355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Pp3c9_25400V3.1.p 366 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKYRG 415
                        9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-11262321IPR001471AP2/ERF domain
CDDcd000181.22E-18262328No hitNo description
SuperFamilySSF541711.77E-15262330IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-13263329IPR001471AP2/ERF domain
SMARTSM003804.8E-26263335IPR001471AP2/ERF domain
PROSITE profilePS5103218.413263329IPR001471AP2/ERF domain
PRINTSPR003672.2E-5264275IPR001471AP2/ERF domain
CDDcd000185.50E-22364425No hitNo description
SuperFamilySSF541711.7E-17364425IPR016177DNA-binding domain
PROSITE profilePS5103218.834365423IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-17365423IPR001471AP2/ERF domain
SMARTSM003801.9E-28365429IPR001471AP2/ERF domain
PfamPF008476.1E-10366415IPR001471AP2/ERF domain
PRINTSPR003672.2E-5405425IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MDPFASWKPS VGLTLQGTAA ENCEDPKLED FLGGASLGGQ YADREAQQQQ LDSLYYSAGT  60
TATSYVQDNQ SRINVNLPYS LQQGAGSLHD VPSSFRIAYG GVPDQSRLSS PHNYEHPHTR  120
SQPELQGNNL LSGTRLHPQN LMKATLNRST TAELLSHSAL ELPSGGSLNQ NSEDPGLNMW  180
LRHQATAEKT ALTNLACLPP LTLSMSAGSH QSSVYSPAQT AGLLTTADYP TGLEPRKRGA  240
GRSDNKDPSP RKSIDTFGQR TSVYRGVTRH RWTGRYEAHL WDNTCRKEGQ TRKGRQVYLG  300
GYDKEDKAAR AYDLAALKYW GVSTTINFTL DTYEQELEEM KNMSRQEYVA SLRRKSSGFS  360
RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTYSTQE EAAEAYDIAA IKYRGINAVT  420
NFHISRYLAN KIQEAAVNDH PGLESIEAAK EGELSASVIS TPLQYSGQAQ TALMIELSQI  480
DDDHQTTTHS TGTTELLTTE VLSGQGGISK NLHDLQMLYQ QQARNSWGSS SQGDSQRGWL  540
GFGVDSMRAP NTQSKFPAPT SGTSLRNLMG LEAFPQDRNA GAGESSCSAN QALMGHGMQS  600
SSSMISSSGF QGGGSGVYQS GDGRTLNSPP MSNSVYPQQQ QGSLDRGAVV DSPKNSVDES  660
EEASSKSSGY DPVLQGDLSR SGVLYLSPGS GSKGKMASYV ESNSMSPWIG SNSTTVQGLT  720
ERSNLSMGGH MGSGPIFTQS WNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.22080.0gametophore
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6755910.0AB675591.1 Physcomitrella patens APB3 mRNA for AP2-like ethylene-responsive transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385086.10.0uncharacterized protein LOC112286917 isoform X1
TrEMBLA0A2K1K4L00.0A0A2K1K4L0_PHYPA; Uncharacterized protein
STRINGPP1S131_131V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-108AINTEGUMENTA-like 5