PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_23170V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 490aa MW: 54229.6 Da PI: 10.3402

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_23170V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	34.5	3.5e-11	263	287	2	26
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeH 26 CGv+le+G vC++ P gRKRC H Pp3c9_23170V3.1.p 263 CGVMLENGLVCNALPQMGRKRCLVH 287 ***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MVRLLHVIAG FDLVSTCRSP NFSNFSTPSQ SPNLSTPSRS SKTNSAHGDD RHTSNDEEPI 60 MSKLKYRVDG DRYSSISISR KSTTEKQLST PNRHIPVGGS VSPAHSSGRG SPRGPRLFSE 120 VFALGCSIAY RWSSTTTIEL AEFVVSELAD AFDYAWNRGR NSEVRSQDII EKIVLGKRRH 180 STSCCSINSS RWARLIFKRK LVGIKILGAY KPAEGRTRRR PGQRGAGRGP FLLLIKSPHL 240 MILGGKSVKH CEFTKIIIPV DRCGVMLENG LVCNALPQMG RKRCLVHMDV NRSRQLKSSQ 300 AQDFRSGSSG SDNHSADSYN MNSHSTPRRS APAAPSSPCF PSLTTRKSPK IPEETRKRGS 360 VSFNTWLCKS EILRVKSFEW LVAMEEIKGR GNDNCSTSPI LKPDVQSSET NSNEQIAVRV 420 SRASLNLAPV VETVPEQDPE FVLYAPEVDC GMPCRVVPQR SNTRWPPAPM LDSYATTYNP 480 PQFPRISFT*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MVRLLHVIAG FDLVSTCRSP NFSNFSTPSQ SPNLSTPSRS SKTNSAHGDD RHTSNDEEPI  60
MSKLKYRVDG DRYSSISISR KSTTEKQLST PNRHIPVGGS VSPAHSSGRG SPRGPRLFSE  120
VFALGCSIAY RWSSTTTIEL AEFVVSELAD AFDYAWNRGR NSEVRSQDII EKIVLGKRRH  180
STSCCSINSS RWARLIFKRK LVGIKILGAY KPAEGRTRRR PGQRGAGRGP FLLLIKSPHL  240
MILGGKSVKH CEFTKIIIPV DRCGVMLENG LVCNALPQMG RKRCLVHMDV NRSRQLKSSQ  300
AQDFRSGSSG SDNHSADSYN MNSHSTPRRS APAAPSSPCF PSLTTRKSPK IPEETRKRGS  360
VSFNTWLCKS EILRVKSFEW LVAMEEIKGR GNDNCSTSPI LKPDVQSSET NSNEQIAVRV  420
SRASLNLAPV VETVPEQDPE FVLYAPEVDC GMPCRVVPQR SNTRWPPAPM LDSYATTYNP  480
PQFPRISFT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.9323	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024385047.1	0.0	uncharacterized protein LOC112286897 isoform X1
Refseq	XP_024385048.1	0.0	uncharacterized protein LOC112286897 isoform X1
TrEMBL	A0A2K1K494	0.0	A0A2K1K494_PHYPA; Uncharacterized protein
STRING	PP1S203_4V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	6e-14	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c9_23170V3.1.p