PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_22420V3.5.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 192aa MW: 21694.2 Da PI: 6.7735

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_22420V3.5.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	1e-19	75	127	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +ft ql+ Le++F++ + p+a++++ LA++lg++ rqV vWFqNrRa+ k Pp3c9_22420V3.5.p 75 KLRFTMAQLRHLEDAFARLQRPNAHQKAALATELGIQPRQVEVWFQNRRARGK 127 568************************************************88 PP
2	HD-ZIP_I/II	92.4	5e-30	74	154	2	82
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 +k+r++ q++ LE+ F + ++ + ++K++la+eLg+qprqv+vWFqnrRAR k+k++E+++e+L++++ l en++L+ Pp3c9_22420V3.5.p 74 QKLRFTMAQLRHLEDAFARLQRPNAHQKAALATELGIQPRQVEVWFQNRRARGKAKRTETNCEVLRQRCHDLIVENQQLNY 154 79***************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.682	69	129	IPR001356	Homeobox domain
SMART	SM00389	7.2E-15	71	133	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-17	71	129	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-17	75	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-18	76	132	IPR009057	Homeodomain-like
CDD	cd00086	5.52E-15	77	125	No hit	No description
PRINTS	PR00031	6.9E-6	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.9E-6	109	125	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MGSNYHYYTK LLLPGRENDT DFSAGSNGNC ECDDSSQRSR QYLHLDQRLI LKTVFPGGLS 60 DNSPEYDDDE GANQKLRFTM AQLRHLEDAF ARLQRPNAHQ KAALATELGI QPRQVEVWFQ 120 NRRARGKAKR TETNCEVLRQ RCHDLIVENQ QLNYLIQTES VGLDSHDLMG NGESPLQLQL 180 ALCNSCKKAP S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384248.1	1e-142	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024384249.1	1e-142	homeobox-leucine zipper protein HOX17-like
Refseq	XP_024384250.1	1e-142	homeobox-leucine zipper protein HOX17-like
TrEMBL	A0A2K1K481	1e-141	A0A2K1K481_PHYPA; Uncharacterized protein
STRING	PP1S454_12V6.1	1e-108	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-22	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_22420V3.5.p