PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_21470V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 450aa    MW: 49089.3 Da    PI: 8.4408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_21470V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-131342161399
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        + ++ +p +f++++   k+ ++ lt+e +s  +W+v +  +  +  + l+ GW +Fvk+++L+ gD ++F+l+ +s f   v +f++
  Pp3c9_21470V3.1.p 134 TECMPIPSSFVKANI--KTLGTSLTIEGPSTDKWTVAVEGSFAKHNISLRLGWVNFVKDHHLQLGDQLLFTLKTDSYF--QVEIFDE 216
                        55699******9985..568899***************5555555599************************988888..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.858122217IPR003340B3 DNA binding domain
SMARTSM010192.7E-5126217IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-18132219IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-15133215No hitNo description
PfamPF023621.8E-11133216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-16135219IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
RRFPRPQSGA AHRDLLASFS SPACCCSATV VILHWIREEL RSRVSCGIEG RIHSFHWEHS  60
AAAAATATLL ICAVTASDPF NHLSFHCYSV RMKKQACADC LAHCERVHGR GGETSDAIPF  120
LSPSFLRRIG LDSTECMPIP SSFVKANIKT LGTSLTIEGP STDKWTVAVE GSFAKHNISL  180
RLGWVNFVKD HHLQLGDQLL FTLKTDSYFQ VEIFDESGCK KLSALDAVNS LKPIDSNVSN  240
QEPNRITSEF EAKPVDLEPD KMSRKAHGAG GSNRFQDASP PARLSGRKQR GRSEVGKENT  300
SSKKACIDPD SPESEGGNPI AAGDDDEVLK QRGSRKVSRG KSRKSQDFYE DVDEEDFTLF  360
HKPRARNTPA RNYKASSSTA EANGQDVKKS SSAAKEKQKA SVLCSVAAYS SVVKPRVALL  420
HEKVGHGMMR CQFVIDGSLD DPAKVLEVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.92800.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383740.10.0B3 domain-containing protein Os03g0622100-like
TrEMBLA0A2K1K4500.0A0A2K1K450_PHYPA; Uncharacterized protein (Fragment)
STRINGPP1S316_8V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-10B3 family protein