PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c9_20560V3.6.p

Common Name

PHYPADRAFT_171864

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

Trihelix

Protein Properties

Length: 320aa MW: 36540 Da PI: 9.1368

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c9_20560V3.6.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53	9.1e-17	59	143	2	80
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt e+l+L +arre+ er+rrg+ +++ +W+++ ++ +++g++rs++qC++kwe l ++kk+ + ek+ ++++s + Pp3c9_20560V3.6.p 59 WTSAEILVLQAARREDFERVRRGNlkerhkSAQERWKWIEDYSWSQGVHRSAQQCQDKWELLVSEFKKVHDYEKSLPEGQKSYWD 143 *******************985445555999****************************************9777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.574	55	121	IPR017877	Myb-like domain
Pfam	PF13837	7.9E-13	58	145	No hit	No description

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MADHMGPPPV VLGHHSLADA IVDDRDHHNH TGSENGVVFG DRRKGDGFRK GRIYKKGNWT 60 SAEILVLQAA RREDFERVRR GNLKERHKSA QERWKWIEDY SWSQGVHRSA QQCQDKWELL 120 VSEFKKVHDY EKSLPEGQKS YWDMSKEEKK KTAMPPNFYK AVYNALVEWY SKSRPADPGE 180 LDSSGPLRHT GASHRSHSIQ VVSDAEFSIP EDSDAEGDPE SLLRKRKRKT SLYPPTEDYG 240 LACILKMNNK RVIDAMMESE NRKDKRHRED MDMEKKKLDF EREKFRGTMQ LGAGYINALN 300 SIGDGLKQLG AVLAATGQA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	228	RKRKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4980	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024384743.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024384744.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024384745.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024384746.1	0.0	trihelix transcription factor ASR3-like
Refseq	XP_024384747.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	A9TTI7	0.0	A9TTI7_PHYPA; Predicted protein
STRING	PP1S314_53V6.2	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-26	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pp3c9_20560V3.6.p
Entrez Gene	5945131

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]