PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_20560V3.2.p | ||||||||
Common Name | PHYPADRAFT_171864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 320aa MW: 36540 Da PI: 9.1368 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53 | 9.1e-17 | 59 | 143 | 2 | 80 |
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 Wt e+l+L +arre+ er+rrg+ +++ +W+++ ++ +++g++rs++qC++kwe l ++kk+ + ek+ ++++s + Pp3c9_20560V3.2.p 59 WTSAEILVLQAARREDFERVRRGNlkerhkSAQERWKWIEDYSWSQGVHRSAQQCQDKWELLVSEFKKVHDYEKSLPEGQKSYWD 143 *********************985445555999******************************************9777776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.574 | 55 | 121 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.9E-13 | 58 | 145 | No hit | No description |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MADHMGPPPV VLGHHSLADA IVDDRDHHNH TGSENGVVFG DRRKGDGFRK GRIYKKGNWT 60 SAEILVLQAA RREDFERVRR GNLKERHKSA QERWKWIEDY SWSQGVHRSA QQCQDKWELL 120 VSEFKKVHDY EKSLPEGQKS YWDMSKEEKK KTAMPPNFYK AVYNALVEWY SKSRPADPGE 180 LDSSGPLRHT GASHRSHSIQ VVSDAEFSIP EDSDAEGDPE SLLRKRKRKT SLYPPTEDYG 240 LACILKMNNK RVIDAMMESE NRKDKRHRED MDMEKKKLDF EREKFRGTMQ LGAGYINALN 300 SIGDGLKQLG AVLAATGQA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 228 | RKRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.4980 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024384743.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024384744.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024384745.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024384746.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
Refseq | XP_024384747.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A9TTI7 | 0.0 | A9TTI7_PHYPA; Predicted protein | ||||
STRING | PP1S314_53V6.2 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-26 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_20560V3.2.p |
Entrez Gene | 5945131 |
Publications ? help Back to Top | |||
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