PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_19090V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 426aa    MW: 45176.7 Da    PI: 9.5758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_19090V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-1393137347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  Pp3c9_19090V3.1.p  93 PWTEDEHRLFLLGLQKLGKGDWRGISKNFVQTRTPTQVASHAQKY 137
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.927320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.46886142IPR017930Myb domain
SuperFamilySSF466892.47E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-1889141IPR006447Myb domain, plants
SMARTSM007175.3E-1190140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-1190136IPR009057Homeodomain-like
PfamPF002492.3E-1193137IPR001005SANT/Myb domain
CDDcd001672.46E-993138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSRRCSHCGL NGHNSRTCPE RGVRLFGVRL TDGVSSTNMR KSVSMNNLSH YSNVHNPASP  60
PEQWESGAAP DGYVSDGLVQ TSNNARERKK GVPWTEDEHR LFLLGLQKLG KGDWRGISKN  120
FVQTRTPTQV ASHAQKYFIR QSNMNKRKRR SSLFDMVSEI GIPSIAEEST SIADEEHATP  180
LPQLSLGHSS LYTAAGVLYE ASSMQGYRLP VRPHSVPKHA SLPMALPLMA VGSSRGGRGA  240
AGAEGMTTEV VGMMGFDAKS SSRSGLERPV ARGMSSSYNM ESSSSRSAMD RGGPAVPVAV  300
ASCAGDPGVR VGGASGAGSI PFSFSWWAGL GQGRPMGPSP PQCNIVRPTA KVAAVSSAPA  360
KMEEEEEKED GRDIAELSLG PSRAEPSQLT AKLLEAPSRH SSAFHVSSSF DANSIQQGVN  420
AISVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.97061e-142protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385673.10.0transcription factor KUA1-like
RefseqXP_024385674.10.0transcription factor KUA1-like
TrEMBLA0A2K1K3S50.0A0A2K1K3S5_PHYPA; Uncharacterized protein
STRINGPP1S89_104V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-59MYB_related family protein