PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_19080V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family MYB_related
Protein Properties Length: 426aa    MW: 45182.6 Da    PI: 9.8262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_19080V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409e-1393137347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ + ++lG+g+W+ I+r    +Rt+ q+ s+ qky
  Pp3c9_19080V3.1.p  93 PWTEDEHRLFLLGLQKLGKGDWRGISRNYVHTRTPTQVASHAQKY 137
                        8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.927320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.96386142IPR017930Myb domain
SuperFamilySSF466895.61E-1788143IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1889141IPR006447Myb domain, plants
SMARTSM007171.3E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1090136IPR009057Homeodomain-like
CDDcd001676.95E-993138No hitNo description
PfamPF002497.0E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MSRRCSHCGL NGHNSRTCPE RGVRLFGVRL TDSVSSTNMR KSVSMNNLSH YSNVHNPASP  60
PEQWESGAAP DGYVSDGLVQ TSNNARERKK GVPWTEDEHR LFLLGLQKLG KGDWRGISRN  120
YVHTRTPTQV ASHAQKYFIR QSNLNKRKRR SSLFDIVSES GVPSIAEEST SIADEEHATP  180
LPQLSLGHSS LYTAAGVLYK ASSMQGYRLP VRPHSVPKHA SLPMALPLMA VGSSRGGRGA  240
AGAEGMTTEV VGMMGFDAKS SSRSGLERPV ARGMSSSYNM ESSSSRSAMD RGGPAVPVAV  300
ASCAGDPGVR VGGASGAGSI PFSFSWWAGL GQGRPMGPSP PQCNIVRPTA KVAAVSSAPA  360
KMEEEEEKED GRDIAELSLG PSRAEPSQLT AKLLEAPSRH SSAFHVSSSF DANSIQQGVN  420
AISVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.97061e-142protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385378.10.0transcription factor KUA1-like
TrEMBLA0A2K1K3S70.0A0A2K1K3S7_PHYPA; Uncharacterized protein
STRINGPP1S89_104V6.10.0(Physcomitrella patens)
STRINGPP1S89_108V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-58MYB_related family protein