PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_18260V3.5.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 491aa    MW: 55001.7 Da    PI: 6.9597
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_18260V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.7e-14158237275
           trihelix   2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                        W+ +e l+L  a+re+  r ++g+       ++ +W+++ ++++++ ++rs++qC++kwe+++ ++kk+k+ e +  +++
  Pp3c9_18260V3.5.p 158 WSVSEMLVLQSAKREDVVRAGKGApgikhrTAQEKWQSIEDYCWSHFVQRSAQQCQDKWESMSAEFKKVKDFECGILPGQ 237
                        9999**********999999987444555599**************************************9887665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.644154220IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-4154219IPR009057Homeodomain-like
PfamPF138372.9E-11157228No hitNo description
SuperFamilySSF534743.31E-18353442IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18206.4E-5368445IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MENGIVPVAM RGEHDTGQSI AFEIGSRGLE VDLKIERGER VAMAENVAID ERRTVVEAAH  60
DLVGSSGLDA LNHNPGVEHN LEDCENGDRR RGDGVLMVEH KHHEIVMRRD MHAGTEPREA  120
GIVEEEPMGM DEDAPTTPTG LAGGEVDRKD RIYKKGPWSV SEMLVLQSAK REDVVRAGKG  180
APGIKHRTAQ EKWQSIEDYC WSHFVQRSAQ QCQDKWESMS AEFKKVKDFE CGILPGQKPY  240
WHMTIDERKS VRVPPNFQKE VYTALWEWYD KNRVIEPGTG MVLTNISKIE EMKVHSPIAG  300
GSSSPSGPVS QSRKRLVERA ATRVPRKLSR VEGISVPGNL DPRLMTLAER EAYAIFELGD  360
FVLKEGATLR GAKLAYKTWG TINEDRSNAI VYPTWFLGRH WENDWLIGPG MGLDPCKYFI  420
IIPNMLGNGL STSPSNCSPP YNKARFPKGL AKHFNGLLAF LIWLNAFFLS VVQHAQVHTI  480
LSFLKVLREL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d6o_A2e-173404482112Homoserine O-acetyltransferase
5d6o_B2e-173404482112Homoserine O-acetyltransferase
5d6o_C2e-173404482112Homoserine O-acetyltransferase
5d6o_D2e-173404482112Homoserine O-acetyltransferase
5d7b_A2e-173404482112Homoserine O-acetyltransferase
5d7b_B2e-173404482112Homoserine O-acetyltransferase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.124751e-163protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383860.10.0uncharacterized protein LOC112286322
TrEMBLA0A2K1K3M60.0A0A2K1K3M6_PHYPA; Uncharacterized protein
STRINGPP1S89_235V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-18Trihelix family protein