PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c9_18260V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | Trihelix | ||||||||
Protein Properties | Length: 687aa MW: 77019.4 Da PI: 6.1554 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44.4 | 4.4e-14 | 158 | 237 | 2 | 75 |
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L a+re+ r ++g+ ++ +W+++ ++++++ ++rs++qC++kwe+++ ++kk+k+ e + +++ Pp3c9_18260V3.3.p 158 WSVSEMLVLQSAKREDVVRAGKGApgikhrTAQEKWQSIEDYCWSHFVQRSAQQCQDKWESMSAEFKKVKDFECGILPGQ 237 9999**********999999987444555599**************************************9887665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.644 | 154 | 220 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-4 | 154 | 219 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.8E-11 | 157 | 228 | No hit | No description |
SuperFamily | SSF53474 | 4.36E-70 | 353 | 664 | IPR029058 | Alpha/Beta hydrolase fold |
Gene3D | G3DSA:3.40.50.1820 | 1.9E-25 | 368 | 663 | IPR029058 | Alpha/Beta hydrolase fold |
Pfam | PF00561 | 3.5E-10 | 413 | 503 | IPR000073 | Alpha/beta hydrolase fold-1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MENGIVPVAM RGEHDTGQSI AFEIGSRGLE VDLKIERGER VAMAENVAID ERRTVVEAAH 60 DLVGSSGLDA LNHNPGVEHN LEDCENGDRR RGDGVLMVEH KHHEIVMRRD MHAGTEPREA 120 GIVEEEPMGM DEDAPTTPTG LAGGEVDRKD RIYKKGPWSV SEMLVLQSAK REDVVRAGKG 180 APGIKHRTAQ EKWQSIEDYC WSHFVQRSAQ QCQDKWESMS AEFKKVKDFE CGILPGQKPY 240 WHMTIDERKS VRVPPNFQKE VYTALWEWYD KNRVIEPGTG MVLTNISKIE EMKVHSPIAG 300 GSSSPSGPVS QSRKRLVERA ATRVPRKLSR VEGISVPGNL DPRLMTLAER EAYAIFELGD 360 FVLKEGATLR GAKLAYKTWG TINEDRSNAI VYPTWFLGRH WENDWLIGPG MGLDPCKYFI 420 IIPNMLGNGL STSPSNCSPP YNKARFPKVR VEDNVRAQYR LVTEQFGIRR LKLVLGWSIG 480 AGQAFQWATS FPDMVERILP FGGSARTSPH NFILLEGIKG ALTADSAFQD GWYEKLPSKG 540 LRASARVYAG WGFSQSFYWN EVWREIGYSS LEDFLVGFWE GFILDRRDPN NLLTMLWTWQ 600 NGNIGLTEGF DGSVEKALAS IRAKAIVMPA QQDIIFPVSD EEYEVKFMQN AELRVIPGVW 660 GHFAGAGLNA VDTKFIDNAV RDLLSM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d6o_A | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
5d6o_B | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
5d6o_C | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
5d6o_D | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
5d7b_A | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
5d7b_B | 7e-72 | 340 | 683 | 2 | 343 | Homoserine O-acetyltransferase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.12475 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024383860.1 | 0.0 | uncharacterized protein LOC112286322 | ||||
TrEMBL | A0A2K1K3M6 | 0.0 | A0A2K1K3M6_PHYPA; Uncharacterized protein | ||||
STRING | PP1S89_235V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-18 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c9_18260V3.3.p |