PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c9_13630V3.1.p
Common NamePHYPADRAFT_161039
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 497aa    MW: 56552.7 Da    PI: 9.3458
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c9_13630V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.45.8e-21135214286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        Wt+ e l+Li++r+++e r++++ +k  lW+e++++++++ f+r ++qC++kwe+l   yk++++g k++  e+    p++d+l+
  Pp3c9_13630V3.1.p 135 WTRPESLQLIRLRTQLEPRFSKSGRKTELWDEIAEALHKKNFTRDAQQCRDKWEKLTAGYKEVRDGIKDK--ED---NPFYDELH 214
                        ********************************************************************95..44...49999997 PP
2trihelix59.86.8e-19407486286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W++ evl+ i++r em++r+  + ++++lW+  ++++  +g++r  kqC+ekw++l  +yk +++g++++     ++ py+++l+
  Pp3c9_13630V3.1.p 407 WKRTEVLQFIKLRGEMDSRFAHSTRRAALWDGLAERLLVQGIKRDGKQCREKWDKLMAEYKDVTDGKRDQ-----RESPYYSELT 486
                        ********************************************************************84.....3459999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.618127191IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-4129191IPR009057Homeodomain-like
SMARTSM007170.003131193IPR001005SANT/Myb domain
PfamPF138372.0E-18133216No hitNo description
CDDcd122031.04E-24133198No hitNo description
PROSITE profilePS500907.793399463IPR017877Myb-like domain
SMARTSM007170.38403465IPR001005SANT/Myb domain
PfamPF138374.2E-16405488No hitNo description
CDDcd122031.11E-22405470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLPASSRASE HTDRKASDVV EPHVFSIDHQ MPLPSSSSEK QLVAPKHKDK PVTASPGRRY  60
IIDKSASVVS LSHSLDSPHS RISSPLVAFH QSMSTLQASS AKNLENGSNS GAMGEGADEE  120
DKKLRENHKK RSKNWTRPES LQLIRLRTQL EPRFSKSGRK TELWDEIAEA LHKKNFTRDA  180
QQCRDKWEKL TAGYKEVRDG IKDKEDNPFY DELHSLLSGK SMKRDREKER DDLPVQEPPK  240
SSTQDTVTVI EQDKVESLPK TSETHEEDHD EAAGDESARK KRRPEPKFVT VTDIESVQRV  300
LETVITRQQI FFRELLDAME RKEQMREQMR QEKEDKWRAE ERAHRGVFNN AMIVLTQKLV  360
GEQMGASLAM ASTATAAPQT EIPPPLPPAV NSPEGPLGVP KRRSKNWKRT EVLQFIKLRG  420
EMDSRFAHST RRAALWDGLA ERLLVQGIKR DGKQCREKWD KLMAEYKDVT DGKRDQRESP  480
YYSELTAILG RPVEAP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.118360.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385102.10.0trihelix transcription factor GT-2-like
RefseqXP_024385103.10.0trihelix transcription factor GT-2-like
TrEMBLA9RUD20.0A9RUD2_PHYPA; Predicted protein
STRINGPP1S29_84V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.18e-13GT-2-like 1
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]