PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_4400V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 706aa    MW: 75418.6 Da    PI: 8.9351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_4400V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32351408260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgse+prsYY+Ct+a+Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
  Pp3c8_4400V3.1.p 351 EDGYNWRKYGQKQVKGSEYPRSYYKCTQANCPMKKKVERSH-DGQVTEIVYKGDHNHPK 408
                       7****************************************.***************85 PP
2WRKY103.71e-32513571159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Pp3c8_4400V3.1.p 513 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDIKAVITTYEGKHNHD 571
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-29348409IPR003657WRKY domain
SuperFamilySSF1182903.66E-25349409IPR003657WRKY domain
SMARTSM007741.0E-35350408IPR003657WRKY domain
PfamPF031061.1E-25351407IPR003657WRKY domain
PROSITE profilePS5081124.501351409IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-37498573IPR003657WRKY domain
SuperFamilySSF1182907.06E-29505573IPR003657WRKY domain
PROSITE profilePS5081138.285508573IPR003657WRKY domain
SMARTSM007741.6E-38513572IPR003657WRKY domain
PfamPF031062.3E-25514571IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MKGQLSQGTK SASTESRTRL LVKPTPSRPQ PPSSSSMTTH KADSPMSIAS SFLNDQDAEH  60
ELKSFSHLLA GAMSPPVPSD PSTASNLEEK PSPSLDGVGS NSPGRSFAER LAARGAAANK  120
SESVSEVGTA GRLPPSNNGS RYNQSTPSSL PNPRGGEGNG GGGNGGGGGG GGVVAGGGGG  180
GGGGDGNYLT IPPGLLSPTT LFDASLVMLS NAQSEPSPTT GTFSFAHSYY NGAMRGMANG  240
PKDAQNADQG SQGFVFKPLG VKSVSRNQMS SIPNLQKFAG VSQQQAQALA HIQSQHQQQH  300
QQQQQQQQQQ QQASQVPHRA AVEAENSQDS EQDNQPPPPM AVPTFLDRPS EDGYNWRKYG  360
QKQVKGSEYP RSYYKCTQAN CPMKKKVERS HDGQVTEIVY KGDHNHPKPQ PTRRMALSGA  420
HLLADGLSRE TDGNDGRSDG WMGFQTQGHG GPSSASGSDD EDGSKLSNED GDDDEQDSKR  480
RKRNDYSKDV AAAPRTIREP RVVVQTTSDV DILDDGYRWR KYGQKVVKGN PHPRSYYKCT  540
NVGCPVRKHV ERASTDIKAV ITTYEGKHNH DVPAARNSGH DMVAPVGLPP TAAASLQDQG  600
LRYGRQVSAG CGDARRGESI AQAMGLRERI RKDDETYISA PIAMSLSSNG DHRQQQQGSQ  660
SMDGYPPQMM SRPKQEQGDS SSRPSHLNPN SSLYQQNLAH VGMRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37351574878Probable WRKY transcription factor 4
2lex_A1e-37351574878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383352.10.0probable WRKY transcription factor 3
RefseqXP_024383353.10.0probable WRKY transcription factor 3
RefseqXP_024383354.10.0probable WRKY transcription factor 3
SwissprotQ6VWJ61e-96WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2K1K6460.0A0A2K1K646_PHYPA; Uncharacterized protein
STRINGPP1S35_336V6.20.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-85WRKY DNA-binding protein 33