PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_20940V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 685aa    MW: 75913.5 Da    PI: 4.9711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_20940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.34.3e-1193146821374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lLlecA+ +++ +++la ++L+rl++l+sp gdpmqR+aayf  AL +r+ar +++ ++    ++       ++ +a ++++e++P++k
  Pp3c8_20940V3.1.p 314 LVHLLLECATQIEK-NQHLAVSTLCRLRDLSSPLGDPMQRVAAYFCDALTKRIAR-GKGEADPGVLEAP-----HNSPKACQVLNEACPYMK 398
                        68**********98.888999**********************************.4444444443333.....456678999********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                        f+hltaNqaIleav+g+e vHi+Df+i++G+QW+aLlqa+as p  ++pp++RiTg++ +++     + ++ +tg+rL++fAe+l+v+fef 
  Pp3c8_20940V3.1.p 399 FAHLTANQAILEAVKGCESVHILDFGITHGIQWAALLQAFASLPkkQPPPKVRITGISVNNPAsesASLSVLATGKRLQSFAEHLNVEFEFC 490
                        *****************************************988768899*******9988887667778899******************* PP

               GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +++  ++ed+++e+++++p+E+++ n++lqlh++lde++s +    ++L+ v slsP +v+++e++a +n+++F  rf++al++y alfdsl
  Pp3c8_20940V3.1.p 491 PVILVSMEDFTPESIQLNPDEKTVANFMLQLHEMLDEEGSPSI--LRLLRSVISLSPALVTLTEHDAALNRPEFRPRFMDALHFYCALFDSL 580
                        ***********************************99999888..89********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        ++++pr+ ++r +vE+ +++++i+n+va+eg +r+er e  e+W + +e++GF+ vpls++a++qa+ ll ++  d +r++  sg++ l W+
  Pp3c8_20940V3.1.p 581 DSTMPRDCHDRLNVENNYFAKQIENIVANEGVDRTERYECTETWIRIMETVGFTLVPLSHYAYSQAQQLLWQFC-DSFRLQRPSGCIALAWQ 671
                        **************************************************************************.66*************** PP

               GRAS 364 drpLvsvSaWr 374
                        dr+L++vSaW+
  Pp3c8_20940V3.1.p 672 DRSLITVSAWK 682
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.693288663IPR005202Transcription factor GRAS
PfamPF035141.5E-116314682IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAGRDVGAAI CMPRSDPSIV PHPQQILHFS HYNSKQDFSS PSMIPQYGSP RYRQSTEQAS  60
LQDLFSSPLA GSMTMQPLHP GIELDRVGSP LQRGQSLQTC SSPSDPVNLQ HSPHVGDIEK  120
ANSPFSRRTN VALMQDGSPS LKLEQGLHCV APTTPSTVLP PLKMDDFNMG FGGGPTYGSA  180
SGNEWMESFI GDLQPCESTE SSALPPVMVD SWENDFTLPR ELRVRINSES EDASAMAELQ  240
RTGLQQEDYE LQHRLRTLQQ LDQAAADPSL QEELSFGASD HTQYANRKDV SEAEERSTES  300
DYSGGLDKDH SVHLVHLLLE CATQIEKNQH LAVSTLCRLR DLSSPLGDPM QRVAAYFCDA  360
LTKRIARGKG EADPGVLEAP HNSPKACQVL NEACPYMKFA HLTANQAILE AVKGCESVHI  420
LDFGITHGIQ WAALLQAFAS LPKKQPPPKV RITGISVNNP ASESASLSVL ATGKRLQSFA  480
EHLNVEFEFC PVILVSMEDF TPESIQLNPD EKTVANFMLQ LHEMLDEEGS PSILRLLRSV  540
ISLSPALVTL TEHDAALNRP EFRPRFMDAL HFYCALFDSL DSTMPRDCHD RLNVENNYFA  600
KQIENIVANE GVDRTERYEC TETWIRIMET VGFTLVPLSH YAYSQAQQLL WQFCDSFRLQ  660
RPSGCIALAW QDRSLITVSA WKCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-913116821375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.110150.0sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383318.10.0SCARECROW-LIKE protein 7-like
TrEMBLA0A2K1K8770.0A0A2K1K877_PHYPA; Uncharacterized protein
STRINGPP1S362_33V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP67991519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.14e-76GRAS family protein