PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c8_16180V3.1.p
Common NamePHYPADRAFT_187995
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 336aa    MW: 37300.1 Da    PI: 6.4417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c8_16180V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12192217126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  Pp3c8_16180V3.1.p 192 YQPDICKDYKETGYCGYGDSCKFMHD 217
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9188222IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878191219IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-12192222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.6E-13265311IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139205.8E-8268311No hitNo description
SuperFamilySSF578502.45E-13268311No hitNo description
CDDcd001624.01E-9269310No hitNo description
SMARTSM001846.4E-5269306IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.557269307IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEAPSEAGAA AAPAAGAFFK KKIQNKNIRK RPTIDDGDEE EENAGSAVNK GKIAKKGVGR  60
LEFNSGAPVG TSKVQNSEES DKAGEVERAT FVYESTRQVQ TQDDSRATAV SEIETEFDRD  120
NRAIRERVLK QASEALKSGE PSNSKVYKGI HGYTDHKAGF RQEHTISREK AGGAHGPLRA  180
SAHIRMTVRF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQMERE WDQEEKLRKQ  240
RLARGEADTE EGEGAGDDSD DEDALPFACF ICREPFTDPV VTTCKHYFCE HCALKHHSRN  300
KLCYVCNKPT NGVFNTAHEI VRKQKEAKQA AEGGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-699233499327RING finger protein 113A
5z58_M6e-699233499327RING finger protein 113A
6ff4_t6e-699233499327RING finger protein 113A
6ff7_t6e-699233499327RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.153100.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024382662.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ8GX841e-131C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA9SSR10.0A9SSR1_PHYPA; Predicted protein
STRINGPP1S114_84V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-124C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]