PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_7980V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 376aa    MW: 43041.4 Da    PI: 5.6831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_7980V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-052749323
                      ET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                      C+   Cgk F ++ +L++H  tH
  Pp3c7_7980V3.3.p 27 CTfeGCGKGFADPGSLRKHAHTH 49
                      88889**************9998 PP
2zf-C2H218.55.5e-065478123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      + C+   Cgk+F ++s LkrH   H
  Pp3c7_7980V3.3.p 54 FICHydGCGKRFVDSSKLKRHFLIH 78
                      78*******************8877 PP
3zf-C2H223.11.9e-0784108123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp   Cgk Fs   nL++H+rtH
  Pp3c7_7980V3.3.p  84 FVCPfeGCGKAFSLDFNLRSHMRTH 108
                       89**********************9 PP
4zf-C2H218.94.1e-06114138123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       + Cp  dCgk++ + + L+ H+r+H
  Pp3c7_7980V3.3.p 114 HACPyeDCGKRYAHEYKLRAHMRNH 138
                       679*********************6 PP
5zf-C2H210.80.0015209234123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                       + C    C+k++ + + L+ H+r+ H
  Pp3c7_7980V3.3.p 209 FACRypGCTKRYIHEYKLNLHLRNsH 234
                       678888*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-142151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0742554IPR007087Zinc finger, C2H2
SMARTSM003550.00342549IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.15E-82778No hitNo description
PROSITE patternPS0002802749IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-145274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.7755483IPR007087Zinc finger, C2H2
SMARTSM003550.00145478IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805678IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-1665118No hitNo description
Gene3DG3DSA:3.30.160.605.0E-2275107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.14984113IPR007087Zinc finger, C2H2
SMARTSM003552.3E-484108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-13108140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-6108141No hitNo description
PROSITE profilePS5015710.803114144IPR007087Zinc finger, C2H2
SMARTSM003550.0022114138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116139IPR007087Zinc finger, C2H2
SuperFamilySSF576674.34E-5203231No hitNo description
Gene3DG3DSA:3.30.160.609.7E-8205231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219209239IPR007087Zinc finger, C2H2
SMARTSM003550.039209234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVAQFTGMAA AMEEQEAEEE NEILYLCTFE GCGKGFADPG SLRKHAHTHG EKQFICHYDG  60
CGKRFVDSSK LKRHFLIHTG EKHFVCPFEG CGKAFSLDFN LRSHMRTHTG ENYHACPYED  120
CGKRYAHEYK LRAHMRNHHD KSIPEMTPPP MHMERDRERD QELEMSRERD RDMDRERERE  180
MEKEREIAPV GRPRSGPPRQ DVNASDRPFA CRYPGCTKRY IHEYKLNLHL RNSHADENPE  240
FGEEPIGRGD SDGEDDIDDG SMQGTPARAA ATARGSGRGK LKIIPKRDPA KQQRRGHLKA  300
QKEVDLNLRV RTLPSETLPT YWRGGQVKHT APDDSEETED EDAENTEDEG YRYYNGRGEG  360
AMAVDDEDTE DDGDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-36271388117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.23241e-77protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379566.10.0zinc finger transcription factor YY1-like
TrEMBLA0A2K1KAX80.0A0A2K1KAX8_PHYPA; Uncharacterized protein
STRINGPP1S42_134V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-68C2H2 family protein