PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_6590V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 313aa    MW: 35262.5 Da    PI: 7.4159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_6590V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.21.5e-23138557128
               NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + yfFs++ kky+tg+r+n +t+ g+W+atg+dk++++k +++l+g++ktLvfy+g ap+g ktdW + e++l
  Pp3c7_6590V3.1.p  13 DRYFFSRKGKKYPTGTRANLVTTMGFWEATGRDKPIHTKlNQTLIGMRKTLVFYQGCAPHGIKTDWNLREFSL 85 
                       57************************************988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.0571106IPR003441NAC domain
SuperFamilySSF1019415.49E-2612106IPR003441NAC domain
PfamPF023654.2E-81485IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MCSSKPRPTA QIDRYFFSRK GKKYPTGTRA NLVTTMGFWE ATGRDKPIHT KLNQTLIGMR  60
KTLVFYQGCA PHGIKTDWNL REFSLDDRSE RPTHDGGWVV CCVFKKNKNL KMEMQQERAT  120
SYEEQMGALP PEALGSPNSN EYLNSLHREL GYPSSLNRPD DVNYFMNLYP ETSNSGLCEF  180
NDPQTSSGSD GTELNHEETI SGSSHNDSCF EDRSLSLPLG SWSSAKAKAL RVIKEQADDM  240
CFEDEMLRFG FYGIDHDRDC SGESLNGMAG QGCFNPKLQS TTSPKWVKVL VNPMTSRNRV  300
FPSRSKDDVR KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-181510774166NO APICAL MERISTEM PROTEIN
1ut4_B2e-181510774166NO APICAL MERISTEM PROTEIN
1ut7_A2e-181510774166NO APICAL MERISTEM PROTEIN
1ut7_B2e-181510774166NO APICAL MERISTEM PROTEIN
3swm_A2e-181510777169NAC domain-containing protein 19
3swm_B2e-181510777169NAC domain-containing protein 19
3swm_C2e-181510777169NAC domain-containing protein 19
3swm_D2e-181510777169NAC domain-containing protein 19
3swp_A2e-181510777169NAC domain-containing protein 19
3swp_B2e-181510777169NAC domain-containing protein 19
3swp_C2e-181510777169NAC domain-containing protein 19
3swp_D2e-181510777169NAC domain-containing protein 19
4dul_A2e-181510774166NAC domain-containing protein 19
4dul_B2e-181510774166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.125421e-132protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980881e-159AB898088.1 Physcomitrella patens PpVNS8 mRNA for NAC transcription factor PpVNS8, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024390073.11e-113NAC domain-containing protein 30-like isoform X2
RefseqXP_024390074.11e-113NAC domain-containing protein 30-like isoform X2
RefseqXP_024390075.11e-113NAC domain-containing protein 30-like isoform X2
RefseqXP_024390076.11e-113NAC domain-containing protein 30-like isoform X2
TrEMBLA0A2K1KAP30.0A0A2K1KAP3_PHYPA; Uncharacterized protein
STRINGPP1S42_248V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-32NAC-domain protein 101