PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_2960V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 431aa    MW: 48055.1 Da    PI: 6.7008
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_2960V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.83.2e-14166252186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  + +Li a re+ ++l r++ + ++W ev+k++    + ++  ++++qC+ k ++l+kry+++k+   ++   +  ++p+f+ l+
  Pp3c7_2960V3.2.p 166 EWSEAATAVLISAFREKFHALDRNNFRSKDWGEVAKQVnthcANEKAPKTQEQCRMKVDSLKKRYRQEKDKLAGN---VPCKWPWFEALD 252
                       5************************************9998899999**************************95...6778*****998 PP
2FLO_LFY24.92.5e-0832939750123
           FLO_LFY  50 eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleee 123
                        l++++++  vr + + k+a   +tv tL++m ++eld++m+   e f  +   Ger G+kaa+ + +r+l+++
  Pp3c7_2960V3.2.p 329 LLQNFLEEETVRDF-AKKLASSKYTVATLLEMSERELDEIMS---EEFP-EAARGERRGFKAAIWSRKRKLTQD 397
                       56667777778876.5799********************996...5554.6678****************9883 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-20165254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEEDDQQSTG AVVSHRQQQQ QQQQQQQARR SNSANTISNH PLAIGNAPAA AATEACIAPG  60
HDGSDELHHH QVVQVVVNDN PQDHDHEHEH HHLHHQHHQH HHHGHHPHHH HHQEDHHLSS  120
PGLPPPLELR DSDPDLDDVE GIVGGGDNNT DSPLLKSNAG REPATEWSEA ATAVLISAFR  180
EKFHALDRNN FRSKDWGEVA KQVNTHCANE KAPKTQEQCR MKVDSLKKRY RQEKDKLAGN  240
VPCKWPWFEA LDELIGCSPK QSRIGSARKQ ARFASSPSPR TPGGMPGGYF GGVSPSVYLK  300
KKLARVVSLQ DSIGQLQMAG TLEDNIEALL QNFLEEETVR DFAKKLASSK YTVATLLEMS  360
ERELDEIMSE EFPEAARGER RGFKAAIWSR KRKLTQDCGD DLDMVNASGS IMETSDNFAK  420
KEKKSGSFVR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.26250.0gametophore
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379771.10.0uncharacterized protein LOC112284305
TrEMBLA0A2K1KA390.0A0A2K1KA39_PHYPA; Uncharacterized protein
STRINGPP1S136_122V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-22sequence-specific DNA binding transcription factors