PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_24880V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family GRAS
Protein Properties Length: 394aa    MW: 43467.2 Da    PI: 6.4453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_24880V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS142.25.3e-441643223163
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL+ecA+a++++d +++++l++ l+el sp+gd+ qR+aayf++AL  ++++++s++y+al++ ++++++ ++  ++   ++e+sP+ +f+
  Pp3c7_24880V3.3.p 164 NLLVECARAITANDSARVKNLMWVLNELGSPYGDADQRVAAYFLQALFCKITNTGSSCYRALTAAAERTYSFDTLRKMILDYQEASPWTTFG 255
                        69************************************************************9999997666666555555*********** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
                        h + N a++ea+ege+++Hi+D++ ++++QWp L++aLa+R+eg+p+lR+ +++ +   ++ +l+ +++
  Pp3c7_24880V3.3.p 256 HTAGNGAMMEAFEGETKIHIVDMSSTYCTQWPILFEALATRAEGTPHLRLSTIVISP--EESALQVMKQ 322
                        **************************************************9998733..4555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.551136393IPR005202Transcription factor GRAS
PfamPF035141.8E-41164322IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDKLLVKYQE YPQTDQIADL NTSDEAGPTR SSEDSIFEEP RHSARSQLGS GVVSTSLAAR  60
RTPSSEGHQY PNLQSEESRQ SFPSFRLEQH PHEFDSEPRQ LHDQSPRPEW QYYASPVKPS  120
SGKGDLDGNS MIAGFTGLPS EPYRSSTSQT TESSNSSSHQ WAPNLLVECA RAITANDSAR  180
VKNLMWVLNE LGSPYGDADQ RVAAYFLQAL FCKITNTGSS CYRALTAAAE RTYSFDTLRK  240
MILDYQEASP WTTFGHTAGN GAMMEAFEGE TKIHIVDMSS TYCTQWPILF EALATRAEGT  300
PHLRLSTIVI SPEESALQVM KQIMTSAGPA AGRSPRHHVQ SHSSSRVGDC ATRRAVQSAR  360
CAPVHLPKRK SEDYDPCGGR SGSDFARFYC LFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B6e-611363236201Protein SHORT-ROOT
5b3h_E6e-611363236201Protein SHORT-ROOT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379763.10.0protein SHORT-ROOT-like
TrEMBLA0A2K1KCY70.0A0A2K1KCY7_PHYPA; Uncharacterized protein
STRINGPP1S97_39V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.13e-62GRAS family protein