PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_24490V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 505aa    MW: 55664.1 Da    PI: 7.8376
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_24490V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31215274160
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        ++Dgy+WrKYGqK+vk+s++pr+YYrCt+a+Cpv+k+vers+edp +v++ Yeg+H h+k
  Pp3c7_24490V3.2.p 215 MEDGYKWRKYGQKPVKNSPHPRNYYRCTTAHCPVRKRVERSTEDPGLVITSYEGTHSHPK 274
                        58********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-33200274IPR003657WRKY domain
SuperFamilySSF1182903.27E-28208274IPR003657WRKY domain
PROSITE profilePS5081130.458210275IPR003657WRKY domain
SMARTSM007741.7E-35215274IPR003657WRKY domain
PfamPF031066.1E-25216273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MALNERKDCV ETKDCSGSVD SSNGGGEEAK LSLDESKDQN YAWAQHVFES QYLDLSNFSP  60
KGLITPRLGE GGEFPDLGTI CASPLFSDQL KFLQSWSPRL PPNSELVWSP KVNNVENSES  120
VSTSTQSGES DPGSSNPMVT SDSAASGSRE ETKKSRKRLN VECTSEGSNI SGVEDVPKNK  180
RNNSSLIKQI QKNKGPKRLR EPRYAIKTRT EVDVMEDGYK WRKYGQKPVK NSPHPRNYYR  240
CTTAHCPVRK RVERSTEDPG LVITSYEGTH SHPKINQTKN SSGDLNTYEA ESLQESISQL  300
QKGLPAMTSA LPNLVSPQDN LGLLPNLDSL LTGWPSLMNR NQQPPSLQDN MSFVMAYQIV  360
RLQFELQARA QQLMRYTAAQ QSLAGGLPKN PFNIDPQGFT QFPLPDLLSL MQNYTDLSGD  420
SNQLEPNHVP KPEPIMQSSL LARRANAARL RTSSLNPNME SSLKRQQFMT QQGMAALHNA  480
GPPSEQNTSG PDQAPGPAPS SRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23203272271WRKY transcription factor 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.152100.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381406.10.0probable WRKY transcription factor 20
TrEMBLA0A2K1KCW20.0A0A2K1KCW2_PHYPA; Uncharacterized protein
STRINGPP1S407_55V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-34WRKY DNA-binding protein 57