PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c7_24150V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 443aa    MW: 48967.7 Da    PI: 6.5137
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c7_24150V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.39.6e-14171264186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                        +W+++ + +L++a  e+ ++l rg+   + W+++++++            g+ ++++qC+ k +nl+kryk ++e ++      +s++ ++d
  Pp3c7_24150V3.1.p 171 EWSENATTVLLQAFGEKYHALDRGNFTSKIWADIAARVnsrgsltgnIVDGIPKTQEQCRIKVDNLKKRYKVEREKKRVS-GSGTSKWIFYD 261
                        5********************************************99999***********************9999976.555669***** PP

           trihelix  84 qle 86 
                         ++
  Pp3c7_24150V3.1.p 262 MMD 264
                        998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-19171266No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MMMHQHQHQQ HPGDGGGADA MDAHGLACDD HHVVVGRMDL APQVQGLRML DEQQEHEQQQ  60
RILYGEKGLG DHDHDNMGKG QHPGHVVVYG DRGHENGHDH AHAYGVEIGN GKHGVVDDMD  120
AKLGGLSAAM LRVDAKMEGR ERQMSEGDVG TANSPQVGKL RGRSSRDPAI EWSENATTVL  180
LQAFGEKYHA LDRGNFTSKI WADIAARVNS RGSLTGNIVD GIPKTQEQCR IKVDNLKKRY  240
KVEREKKRVS GSGTSKWIFY DMMDELIGAN PRHMRSGGGI GGGDSPLGLE GGDTPLGIRS  300
SGEEEERMYY LEGAGGDGDQ TSETIPKISP IQGRRKRKRA LEDLEREHVN APALMALFEG  360
YNVPPAIIDA MLQEDMDEYT LLNSRDITVL LDQLRSKHRL HIKLGPAERI KQAIEAAKEK  420
KNNLALVIQQ QQQQQQQQQQ QQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381103.10.0uncharacterized protein LOC112284937
TrEMBLA0A2K1KCU40.0A0A2K1KCU4_PHYPA; Uncharacterized protein
STRINGPP1S407_20V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-15sequence-specific DNA binding transcription factors