PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c7_15000V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 257aa MW: 28686.4 Da PI: 8.4019 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.2 | 6.2e-31 | 58 | 113 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++ YkeC +NhA+ Gg+avDGCgEfmps geegt+++lkCaAC+CHRn+HR+eve Pp3c7_15000V3.2.p 58 AISYKECNRNHAIFSGGYAVDGCGEFMPS-GEEGTIESLKCAACDCHRNYHRKEVEV 113 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-19 | 53 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 8.0E-29 | 59 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.046 | 61 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.0E-28 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-31 | 175 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.54E-18 | 175 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.4E-26 | 189 | 246 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MESLVSHKVD YSTMSIAATF AGLHDSSKLK FFNSGFGVIK MDELKRIEAE NVSAKDKAIS 60 YKECNRNHAI FSGGYAVDGC GEFMPSGEEG TIESLKCAAC DCHRNYHRKE VEVEESCDWQ 120 IFRCDDRKRG QMTAPGFPSQ TATPHPLALP SPSQMISPVN QFQHYLLGPR PANSGDGDGG 180 FGRSPSTMKK RFRTKFTSNQ REKMGAFSEK LGWRIQKHDE PAVQEFCSDV GVKRHVLKVW 240 MHNNKNTLGK KVDQVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-26 | 190 | 247 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024380052.1 | 0.0 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 1e-53 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 1e-53 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K1KBR8 | 0.0 | A0A2K1KBR8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S153_189V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-55 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c7_15000V3.2.p |
Publications ? help Back to Top | |||
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