PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c7_15000V3.1.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ZF-HD

Protein Properties

Length: 257aa MW: 28686.4 Da PI: 8.4019

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c7_15000V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.2	6.2e-31	58	113	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++ YkeC +NhA+ Gg+avDGCgEfmps geegt+++lkCaAC+CHRn+HR+eve Pp3c7_15000V3.1.p 58 AISYKECNRNHAIFSGGYAVDGCGEFMPS-GEEGTIESLKCAACDCHRNYHRKEVEV 113 689***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-19	53	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.0E-29	59	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.046	61	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.0E-28	61	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	175	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.54E-18	175	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-26	189	246	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MESLVSHKVD YSTMSIAATF AGLHDSSKLK FFNSGFGVIK MDELKRIEAE NVSAKDKAIS 60 YKECNRNHAI FSGGYAVDGC GEFMPSGEEG TIESLKCAAC DCHRNYHRKE VEVEESCDWQ 120 IFRCDDRKRG QMTAPGFPSQ TATPHPLALP SPSQMISPVN QFQHYLLGPR PANSGDGDGG 180 FGRSPSTMKK RFRTKFTSNQ REKMGAFSEK LGWRIQKHDE PAVQEFCSDV GVKRHVLKVW 240 MHNNKNTLGK KVDQVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-26	190	247	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024380052.1	0.0	zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	1e-53	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-53	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2K1KBR8	0.0	A0A2K1KBR8_PHYPA; Uncharacterized protein
STRING	PP1S153_189V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-55	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Pp3c7_15000V3.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]